Gene detail

Detailed information of g16754.t1 in Montipora capitata

Genomic Location: Sc0000716:65460...69463
NR annotation: XP_015751835.1, PREDICTED: uncharacterized protein LOC107331736 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16754.t1

atggagtcttacgagatagagtcagtccatcaaaaatgtcctgccttcaagaatggctgcccttattctaagctgcctcaagatctcttcatggaggagatgaagaaatgccctgacttcaaacaaggatgcccattcaagaagacagatagtatcaaggggattttagaagaactgtccaagatgccagaatctaagcacagtacaggcccagcccatgaagagttgctaaacttgctgagggctgttcatttggagtccagaaggttagaagagaaagttggagaatgtcctgtgttcaaaaccaaggagggttgtcctttcaaagatgctgccaaagatggagagcttgtttcaacaagtttactggtctcggatatcatgaagctgaaggaaaagtgtcccgctttcagagaaggatgtccatttgccacattggacaatgaagtgcttttggaagaaatcaagaaatgccctgagtttaaggaaggttgtgccttcaaaggtacaaaatcagttgaagaaatatacagtcgactatcacaaatgccaagcgatggcaaaagttgtcaccataaagaagctatgttgaagaccatgaaagccattcacagtgtttgccaggagaaagctgataagtgtccagtttttgaaggggaaggatgcccattcaagtctgttgaaagccatgggaagccactaattaatcctcctgaagcagttcttccaacattagcaaatcataaaggcaccaattcaggtgttcattttgttgtcctgacagatttaaaagaagcatgccctgcctttggatcaggttgtccatttgcaaagcttggggaaaatgactttggacaagacctgaagaagtgccctgagtttaagaatggttgtccgtacaaggatagcaaagatgttggcgacctctacaagagactttctaatttgccagtgttttctggcaaggaatcacatggtgctcaattacttgaaatgttcagacatcttcatgaagtgtcactttctttgaaagacgagatgggaacatgcccggtgttcattacagatcaaggctgtccattcaaaacattatgcagtgacggaaagccccttattgacaggctggatgaccaacgttggacaaaggtacttcaaagttctgtggatgatgttatgaaggatgtgaatgaagagataaagaatatagaaccatcagtagtgctctccaaggaactgaaagttggcaccaagaggatacacagagaggctgagaatatccagtttgtcaaggaatttgccaagggaagaattgaaaagcagtggtacaaacacctgcttgcagacctttactttgtgtacagggctcttgaagaagagagtgaaaaatgcagtgaccatgagcttttcaaagctgttcactttccagacaaacttggtcgtctgcagagcttggaagaggatatggagttttattttggatcagagtggaaagaggtgcctatgtcagaagctactaaagcttatgtgaacagaatccacgaagtcagcagaagggatcctagtctgctcattgctcatcattatactcgataccttggggacttgtctggaggacagattcttcgtagaatggccatcaaagcaatggatctaccaagtacgggtgaaggggtgaaattttacgaatttgagaacattcctgatgccaagaagttcaagaacatgtacagatcccgtcttgatgaactcttcattgataaagcaaaatcagatgaaattgtcaaagaagcaaattatgccttccttttgaatatccatttgtttcaagagatagacaccttggcaggttttgaagatgatggtcggaaaaagaaaatcaaaccaattgaggaagtccagagcactttcagtgattctgcaaaggaggcagctggggtgtgtccatttgctaccatggcaaagaaaccctcgcagacaagcacttcatcttcaaagaagaaaggtgtaagcatcaatccagtgtatttggcagtgtttgttgcagttacagctactctgattggactattgttgacaaaaatgtcctag

Transcript

g16754.t1

ATGGAGTCTTACGAGATAGAGTCAGTCCATCAAAAATGTCCTGCCTTCAAGAATGGCTGCCCTTATTCTAAGCTGCCTCAAGATCTCTTCATGGAGGAGATGAAGAAATGCCCTGACTTCAAACAAGGATGCCCATTCAAGAAGACAGATAGTATCAAGGGGATTTTAGAAGAACTGTCCAAGATGCCAGAATCTAAGCACAGTACAGGCCCAGCCCATGAAGAGTTGCTAAACTTGCTGAGGGCTGTTCATTTGGAGTCCAGAAGGTTAGAAGAGAAAGTTGGAGAATGTCCTGTGTTCAAAACCAAGGAGGGTTGTCCTTTCAAAGATGCTGCCAAAGATGGAGAGCTTGTTTCAACAAGTTTACTGGTCTCGGATATCATGAAGCTGAAGGAAAAGTGTCCCGCTTTCAGAGAAGGATGTCCATTTGCCACATTGGACAATGAAGTGCTTTTGGAAGAAATCAAGAAATGCCCTGAGTTTAAGGAAGGTTGTGCCTTCAAAGGTACAAAATCAGTTGAAGAAATATACAGTCGACTATCACAAATGCCAAGCGATGGCAAAAGTTGTCACCATAAAGAAGCTATGTTGAAGACCATGAAAGCCATTCACAGTGTTTGCCAGGAGAAAGCTGATAAGTGTCCAGTTTTTGAAGGGGAAGGATGCCCATTCAAGTCTGTTGAAAGCCATGGGAAGCCACTAATTAATCCTCCTGAAGCAGTTCTTCCAACATTAGCAAATCATAAAGGCACCAATTCAGGTGTTCATTTTGTTGTCCTGACAGATTTAAAAGAAGCATGCCCTGCCTTTGGATCAGGTTGTCCATTTGCAAAGCTTGGGGAAAATGACTTTGGACAAGACCTGAAGAAGTGCCCTGAGTTTAAGAATGGTTGTCCGTACAAGGATAGCAAAGATGTTGGCGACCTCTACAAGAGACTTTCTAATTTGCCAGTGTTTTCTGGCAAGGAATCACATGGTGCTCAATTACTTGAAATGTTCAGACATCTTCATGAAGTGTCACTTTCTTTGAAAGACGAGATGGGAACATGCCCGGTGTTCATTACAGATCAAGGCTGTCCATTCAAAACATTATGCAGTGACGGAAAGCCCCTTATTGACAGGCTGGATGACCAACGTTGGACAAAGGTACTTCAAAGTTCTGTGGATGATGTTATGAAGGATGTGAATGAAGAGATAAAGAATATAGAACCATCAGTAGTGCTCTCCAAGGAACTGAAAGTTGGCACCAAGAGGATACACAGAGAGGCTGAGAATATCCAGTTTGTCAAGGAATTTGCCAAGGGAAGAATTGAAAAGCAGTGGTACAAACACCTGCTTGCAGACCTTTACTTTGTGTACAGGGCTCTTGAAGAAGAGAGTGAAAAATGCAGTGACCATGAGCTTTTCAAAGCTGTTCACTTTCCAGACAAACTTGGTCGTCTGCAGAGCTTGGAAGAGGATATGGAGTTTTATTTTGGATCAGAGTGGAAAGAGGTGCCTATGTCAGAAGCTACTAAAGCTTATGTGAACAGAATCCACGAAGTCAGCAGAAGGGATCCTAGTCTGCTCATTGCTCATCATTATACTCGATACCTTGGGGACTTGTCTGGAGGACAGATTCTTCGTAGAATGGCCATCAAAGCAATGGATCTACCAAGTACGGGTGAAGGGGTGAAATTTTACGAATTTGAGAACATTCCTGATGCCAAGAAGTTCAAGAACATGTACAGATCCCGTCTTGATGAACTCTTCATTGATAAAGCAAAATCAGATGAAATTGTCAAAGAAGCAAATTATGCCTTCCTTTTGAATATCCATTTGTTTCAAGAGATAGACACCTTGGCAGGTTTTGAAGATGATGGTcggaaaaagaaaatcaaaccaATTGAGGAAGTCCAGAGCactttcagtgattctgcaaaGGAGGCAGCTGGGGTGTGTCCATTTGCTACCATGGCAAAGAAACCCTCGCAGACAAGCACTTCATCTTCAAAGAAGAAAGGTGTAAGCATCAATCCAGTGTATTTGGCAGTGTTTGTTGCAGTTACAGCTACTCTGATTGGACTATTGTTGACAAAAATGTCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09601	Heme oxygenase 1 OS=Homo sapiens OX=9606 GN=HMOX1 PE=1 SV=1
Q8YVS7	Heme oxygenase 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=pbsA1 PE=3 SV=1
P14791	Heme oxygenase 1 OS=Gallus gallus OX=9031 GN=HMOX1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01126 all species →	Heme_oxygenase	Heme oxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016084 all species →	Homologous_superfamily	Haem oxygenase-like, multi-helical	Interproscan
IPR016053 all species →	Family	Haem oxygenase-like	Interproscan
IPR002051 all species →	Family	Haem oxygenase	Interproscan
IPR018207 all species →	Conserved_site	Haem oxygenase conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10720 all species →	HEME OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004392 all species →	Molecular Function	heme oxygenase (decyclizing) activity	Interproscan
GO:0006788 all species →	Biological Process	heme oxidation	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0042167 all species →	Biological Process	heme catabolic process	Interproscan
GO:0055072 all species →	Biological Process	obsolete iron ion homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16754.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16754.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

194.9Max TPM

61.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	54.76	192.27
whole organisms · low pH treatment	15	15	70.98	184.86
whole organisms · extra low pH treatment pH treatment	12	12	60.07	194.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	192.27
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	174.87
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	171.80
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	132.17
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	104.33
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	87.60
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	77.99
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	70.90
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	61.40
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.82
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	11.97
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	10.08
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	9.49
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	7.86
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	7.59
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.42
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.12
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	2.94
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.12
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.18
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	184.86
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	182.79
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	180.02
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	109.17
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	91.23
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	86.07
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	69.85
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	64.80
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	60.99
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.34
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.07
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.05
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.72
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	5.88
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.80
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	194.92
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	177.11
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	88.77
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	84.42
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	73.26
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	67.13
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	8.51
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	7.66
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	6.56
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	6.40
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.73
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.41

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.