Gene detail

Detailed information of g16757.t1 in Acropora digitifera

Genomic Location: chr8Alt:834186...854024
NR annotation: XP_029196066.2, peroxisomal carnitine O-octanoyltransferase-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr8Alt.g16757.t1

AATCGTGCATTTTCTGTGTTGTGTAATGTGTCATTGAAGTGTCTCACACCGGATGTCGATACCGTGTGCCAAGAAAGGTTCCCTGAGGGTTTGTTTTTTTGCTTTTCCAACGTGGATTATCAGATCCCACTTAATGTACAGAAGTATGGAAAAAACCTTTGATATACAAGACAAGCTGCCCAGTCTTCCAGTTCCTCCTTTGGCTCAGACATGTGAGAAATATTTGGATTCAGTGAAGCCTCACCTGACTAGAGAGGAATTCCTCCGTACCCAGTTTATTGTGAATGAATTTGCCAGTGGTGTTGGAAAGGAACTACAAAAGAAACTGGAGTCAAGAGCCAAAAATTTTAGAAACTGGTTGGAGACATGGTGGGAAGATGCTGCTTATTTATCACCTCGCCTTCCATCAGCTCCATTTATCAACTTTGCTGGAACAATTGGCTTGAAAGATGCTTGGCCAGTGCAACATGGCACTCAGATCAAAAGAAGTGCTCTCTTGACTCATGCAATTCTTTATGTTTGGCAGAAATTGTACAGACAAGAATTACCAGTTGACAGGATGGGATCAGTTCCCATGTGTATGTATCAGTCTTCACGTCTCTTCTCTTGCTGCAAAATTCCTGGAAAAGAAAAGGATTATCTAAGATCAACTTTTGTGAAAGCCCCTCATAAATCTCCTCGGCACATCATTGTTCAAACAAGAGGGAGGATATTCTGTTGTACAGTACTGGATGAAAATATGGAACCTCTATCACCACCTGAAATTGAACAACAGCTCAAGGAAATACAATCTTTGGCTGATGCCAGTGGCTTGGGCCCATCAATTGGCTGTTTGACAGGAGAGGAAAGGAATATCTGGTATGAGTTGCGAGAGAGGTTGATAAGTCTGAACAGATCAAACCAAAGGAACCTTGATGTCATTGAAACAAGCTTGTTTTCTTTGGTGTTGGATGAAACTTCACCTGTCACAGACCTTGAGGTCCTGGTTGAAAGTTTAACCGGTGGTTGCAGAAACCGTTGGTTTGACAAGTCCCTAAGTATTTTAGCATTTAAATCTGGGATGTTTGGAACTAATTGTGATCATGCCCCCTTTGATGCTATTGTGGAAATCAATGCAATTAGCTTAGCATGTTCCCATCTCATATATAATGGTGGGGAATGGAAGGGAAGCAAGGAAATCAAGAAGCACTTTAAGCCTGAGGAGTTGGTATTCACTGTGGATGATGTTATTTGTGGTGCAGTTGGGCAGGCTATTGAAAAATATGACAAGGCAGCATCTTTAATCGACATAATAGTGTATCAACCAAATGAATATGGAAAGGGTTTCATCAAACCATTTAAGATCCACCCTGACACTTATGTACAGATGGCAATTCAGTTAGCATATTACAAAGTCCATGGCAAAGCTGCTGCCACTTATGAAACCTCTCAGACAAGGCAATTTTATCACGGCAGGACGGACACCGTTCGTAGTTGTACTGTGGAGTCAACAGCTTGGTGCAAAGCAATGACAGAAAACCTCACTTCCGATAAATTGCCGCTGTTTTTCGAAGCATGCCATAAACACGATAAACTTATGAGAGAAGCTGTGCAAGGACAAGGTATTGACCGACATTTGCTGGGATTACAGCTGCTTGCTTCGTCTGAAGGATTTGAAACTCCGGCAATCTACGTGGACAAGGCTTGGACTGCCAGTGGCGGAGGCGCCAACTTTGTCCTGTCAACAAGCTGTCTTGGCTTTAACCCCGTCATAGGTGTTGTTGCTGCTATGGTAACCGGGGGTTATGGAGCCTTTTATAGCATCGAAGAAGACGACATTAATTTTAACATTACGACATTTAAAAACTCAAATGCGACGGATGGAAACAAATTCAAGAATGCTTTAGGAGAGAGTCTGCGAGACATCAAGAATCTGCTTCTCTCTTCCAAGCTTTGAATTACAATTTGCATACATTTCTCAACCATCTTACATTAATTCAGTCCACGTTCATTTCAATTATTTCCTCTAGCATTGCTAAAGAAATTGCCGATGTAGGACACGACAATGAATAAAGTGCATACAGTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O19094	Peroxisomal carnitine O-octanoyltransferase OS=Bos taurus OX=9913 GN=CROT PE=1 SV=1
Q9UKG9	Peroxisomal carnitine O-octanoyltransferase OS=Homo sapiens OX=9606 GN=CROT PE=1 SV=2
Q9DC50	Peroxisomal carnitine O-octanoyltransferase OS=Mus musculus OX=10090 GN=Crot PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755 all species →	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000542 all species →	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551 all species →	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR042231 all species →	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589 all species →	CARNITINE O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008458 all species →	Molecular Function	carnitine O-octanoyltransferase activity	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05940	CROT; carnitine O-octanoyltransferase	EC:2.3.1.137	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.