Gene detail

Detailed information of g16760.t1 in Acropora digitifera

Genomic Location: chr8Alt:887891...903750
NR annotation: XP_044178926.1, LOW QUALITY PROTEIN: sentrin-specific protease 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16760.t1

ATGTTTTCCTCTCTGTCGTCTTTTTATGATAATATTCGCTCTTATTCTCTCACTGGAAAGAAACCGGGCGATAAGAGGCAAAGAGACAGGGAAGATGATGATGTAATTATAACAGATGTACTTCAGACACCACCTGCCAAGAGATTGCGGAATATAGAGAGAGCTGCGTGTGAAAGTGGCAGTAATAGCCCCATCCTAAACTTCTCAGAGTTTGTTAAGAAGGTCACTTGGTCTGGCAGGTACATCTGGAACTATGTTGTAAAAGGGGAGACTGGCTGTGACAACAGTGAGTCATCCTTGAGTAGAGATCTTGGGGATGCTGAGGAAGAAATGGAAAAGTATCAATCTTCTGCAGACATAGGGGAAATTTTTGGCTCTACTGGGACTAGAGATTCAGGTTTAATGAGAAAACCATTGATAAAACACAGTGGACATGAAGTAACTGTGAGGACAAGATCAGCTGGGAAAAGAGAATGGCATGTGTCGGCATCCCCTAAGCGAAACAGGAAAAACTTAGCTGTGGGCTCTGGGAAAGTTTATGATGCATCCAAATATAAGGATGTATCAAGCAGTAAAGCCAATGGATCATTAGGTTCCAGCAATGCCAGGAAGGGAACTTCATGGAATCTTCCAGAATCACCTCAGCCGAGCATTTCTTCTTCTCGCAAAAAAGATCATGCTCAGAGTGGAAAGACTCCTTTAAGCAAATCACCAATTAACAGAAGTGGCAGATTTATAAGTACTGCTGAGAGGGTTGTGAGGCTGGAAGAAAGAGATAGATACAAACAGTTGGTGGCACAGTTTACCACTCAGGGAACACCCGATTGCACATTTAACACAAGATCGGACAATAATTTGCATGTTCACACTGATTTTCTAACAAGAACAAGATATAATACCAGATCTGGGGATGGAAGCCTCTTGTCACCAAAGTCCAAACTACCCACCTCCCGTGATCCAATCACAGCACCTGCCTCCCCTCCTAAATCACCTACTAGGCTTCGAGTGATGGCATCACCAAGAACATCTGCAAACAGGTCAAGGAAGCTGGCTCAAGATGTTTCTTTGTACTCTAGACCAGGTCCAATAGAAGAAGTGTCTTCTCCAAGTAGAAATCTAAGATCAAGCACTCGTGGCAAATCTATGGCAGGAAATATATTTGATGAGGAATGGACAAAAAAGTGGAAAGACATTTTATCTGAGGATAGCTTAACAAGACAAAGGGATATCGCTAAGGAGGAAAGAAAGCTGAAGGCAATAAAGCAGAAGAGAGAAGAAGAAGCACAAGCACTTGAGGATGAGGTGCAAAAGAGGTTGTTAAAAGGATGGGATACTGTGGAGGAAGTGGAAGAAGAAGAGGTTACAGAAGAGGCAGATTCATTTGTTGCCCTCTCTTCTGACATGGAACAAATGGTCGATGCTGCTCTGTCTCCAGGAAATGCTGATGATCCCATTGTCGAAGGCTTCCAAGTCACCCTAAAACGCAGTGATCTCGCAACACTGAGCACTCTGAATTGGCTGAATGATGAGATAATGAATTTTTACTTTCAACTTCTGGTGGAAAGAAGTAGACGAGAAGGCAATCTCAAAATCCATGCATTCAATTCGTTTTTTTATCCAAAACTGATCAAGTCAGGTTATACAAGTCTTCGGAGATGGACAAAAAAGATCGATATCTTTGCCATGGACATGGTTCTTGTCCCAGTTCATTTGGGAATGCACTGGTGTTTGGCGGCAATTGATTTCAATAAAAGATGCATTACATACTATGATTCATTGAAAGGTTCTAACGCACAGTGTCTCACAGCTCTCAGGGCTTATCTCAATGATGAATCTCTTGATAAAAAAAAAAAGCCGTTCGATCTCAGTGAATGGAAGCTAGCAGCGCCAAAGGATATACCTGAACAACTAAATGGATGCGACTGCGGGGTTTTCGCTTGCAAGTATGCAGAATATTTATCAAGAGGAGCCAAATTTGATTTTGACCAGAGAGATATTCCTTACTTCAGGCGCCGAATGGTTTACGAGATTCTGAGCAAGAATTTGTTATGA

Transcript

chr8Alt.g16760.t1

ATTGTTTTATTTTTATTTTTAGTGAGATACGTGTACGTGTCTTCACTCAGTCTGAGATCGAAAATGGGGTGAAAAATGTGAAACATCACGTGACATTGCCTGCATTTGGCCAGTGGTTTTCCTGTGGCGGTAATTTCGTGAGGACACCATGTTTTCCTCTCTGTCGTCTTTTTATGATAATATTCGCTCTTATTCTCTCACTGGAAAGAAACCGGGCGATAAGAGGCAAAGAGACAGGGAAGATGATGATGTAATTATAACAGATGTACTTCAGACACCACCTGCCAAGAGATTGCGGAATATAGAGAGAGCTGCGTGTGAAAGTGGCAGTAATAGCCCCATCCTAAACTTCTCAGAGTTTGTTAAGAAGGTCACTTGGTCTGGCAGGTACATCTGGAACTATGTTGTAAAAGGGGAGACTGGCTGTGACAACAGTGAGTCATCCTTGAGTAGAGATCTTGGGGATGCTGAGGAAGAAATGGAAAAGTATCAATCTTCTGCAGACATAGGGGAAATTTTTGGCTCTACTGGGACTAGAGATTCAGGTTTAATGAGAAAACCATTGATAAAACACAGTGGACATGAAGTAACTGTGAGGACAAGATCAGCTGGGAAAAGAGAATGGCATGTGTCGGCATCCCCTAAGCGAAACAGGAAAAACTTAGCTGTGGGCTCTGGGAAAGTTTATGATGCATCCAAATATAAGGATGTATCAAGCAGTAAAGCCAATGGATCATTAGGTTCCAGCAATGCCAGGAAGGGAACTTCATGGAATCTTCCAGAATCACCTCAGCCGAGCATTTCTTCTTCTCGCAAAAAAGATCATGCTCAGAGTGGAAAGACTCCTTTAAGCAAATCACCAATTAACAGAAGTGGCAGATTTATAAGTACTGCTGAGAGGGTTGTGAGGCTGGAAGAAAGAGATAGATACAAACAGTTGGTGGCACAGTTTACCACTCAGGGAACACCCGATTGCACATTTAACACAAGATCGGACAATAATTTGCATGTTCACACTGATTTTCTAACAAGAACAAGATATAATACCAGATCTGGGGATGGAAGCCTCTTGTCACCAAAGTCCAAACTACCCACCTCCCGTGATCCAATCACAGCACCTGCCTCCCCTCCTAAATCACCTACTAGGCTTCGAGTGATGGCATCACCAAGAACATCTGCAAACAGGTCAAGGAAGCTGGCTCAAGATGTTTCTTTGTACTCTAGACCAGGTCCAATAGAAGAAGTGTCTTCTCCAAGTAGAAATCTAAGATCAAGCACTCGTGGCAAATCTATGGCAGGAAATATATTTGATGAGGAATGGACAAAAAAGTGGAAAGACATTTTATCTGAGGATAGCTTAACAAGACAAAGGGATATCGCTAAGGAGGAAAGAAAGCTGAAGGCAATAAAGCAGAAGAGAGAAGAAGAAGCACAAGCACTTGAGGATGAGGTGCAAAAGAGGTTGTTAAAAGGATGGGATACTGTGGAGGAAGTGGAAGAAGAAGAGGTTACAGAAGAGGCAGATTCATTTGTTGCCCTCTCTTCTGACATGGAACAAATGGTCGATGCTGCTCTGTCTCCAGGAAATGCTGATGATCCCATTGTCGAAGGCTTCCAAGTCACCCTAAAACGCAGTGATCTCGCAACACTGAGCACTCTGAATTGGCTGAATGATGAGATAATGAATTTTTACTTTCAACTTCTGGTGGAAAGAAGTAGACGAGAAGGCAATCTCAAAATCCATGCATTCAATTCGTTTTTTTATCCAAAACTGATCAAGTCAGGTTATACAAGTCTTCGGAGATGGACAAAAAAGATCGATATCTTTGCCATGGACATGGTTCTTGTCCCAGTTCATTTGGGAATGCACTGGTGTTTGGCGGCAATTGATTTCAATAAAAGATGCATTACATACTATGATTCATTGAAAGGTTCTAACGCACAGTGTCTCACAGCTCTCAGGGCTTATCTCAATGATGAATCTCTTGATAAAAAAAAAAAGCCGTTCGATCTCAGTGAATGGAAGCTAGCAGCGCCAAAGGATATACCTGAACAACTAAATGGATGCGACTGCGGGGTTTTCGCTTGCAAGTATGCAGAATATTTATCAAGAGGAGCCAAATTTGATTTTGACCAGAGAGATATTCCTTACTTCAGGCGCCGAATGGTTTACGAGATTCTGAGCAAGAATTTGTTATGATGCCAACAGGAGTTGCCCTTTAGTGATCAGATCCTCTTGTGAACTAGAGCGTTTAAGTTAATTTTGGGCATAACGGTATGAATTTAAAATGGCCACATCACGGACTTAATGTTAACGAACTTTCTCAATACTTGTATGACCAAACGTAGAACAAGTTAGTTTTTGCGTACTATATTCCTCTTTGATTAAAGTTTCATTTGAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P0U3	Sentrin-specific protease 1 OS=Homo sapiens OX=9606 GN=SENP1 PE=1 SV=2
Q5RBB1	Sentrin-specific protease 1 OS=Pongo abelii OX=9601 GN=SENP1 PE=2 SV=1
P59110	Sentrin-specific protease 1 OS=Mus musculus OX=10090 GN=Senp1 PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606 all species →	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0016929 all species →	Molecular Function	deSUMOylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08592	SENP1; sentrin-specific protease 1	EC:3.4.22.68	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16760.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

58.0Max TPM

47.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	46.97	58.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	58.02
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	57.84
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	53.73
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	52.21
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	51.23
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	51.14
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	49.82
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	49.54
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	49.44
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	49.39
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	48.91
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	48.85
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	48.68
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	48.66
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	48.33
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	48.23
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	47.65
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	47.60
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	47.57
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	47.23
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	46.85
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	46.62
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	46.35
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	46.02
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	45.93
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	45.64
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	45.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	44.99
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	44.55
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	44.29
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	44.18
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	44.17
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	44.04
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	42.22
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	41.76
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	41.51
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	40.65
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	39.11
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	33.89

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.