Gene detail

Detailed information of g16799.t1 in Acropora digitifera

Genomic Location: chr8Alt:1458429...1472325
NR annotation: XP_029200193.2, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVY1	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens OX=9606 GN=HIBCH PE=1 SV=2
Q5XIE6	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hibch PE=1 SV=2
Q58EB4	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio OX=7955 GN=hibch PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16113 all species →	ECH_2	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032259 all species →	Family	Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR045004 all species →	Domain	Enoyl-CoA hydratase/isomerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43176 all species →	3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003860 all species →	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006574 all species →	Biological Process	valine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05605	HIBCH; 3-hydroxyisobutyryl-CoA hydrolase	EC:3.1.2.4	beta-Alanine metabolism	ko00410	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g16799.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

57.4Max TPM

43.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	43.74	57.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	57.39
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	53.48
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	53.10
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	51.86
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	51.50
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	51.03
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	50.04
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	48.52
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	48.33
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	48.06
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	48.01
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	47.52
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	47.22
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	47.12
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	46.92
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	46.86
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	46.78
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	45.69
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	45.12
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	44.45
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	43.94
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	43.52
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	43.16
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	41.42
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	41.11
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	40.25
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	40.19
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	39.36
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	38.91
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	37.86
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	37.66
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	37.51
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	36.99
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	35.61
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	35.53
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	34.67
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	34.38
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	34.12
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	30.76

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.