Gene detail

Detailed information of g16848.t1 in Acropora digitifera

Genomic Location: chr8Alt:2227604...2239155
NR annotation: XP_044179853.1, uncharacterized protein LOC122961272 isoform X3 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16848.t1

ATGGTCATTTTCTACGCAATCAGTTTCAAAGCTGGGAAAACCAACATCACTGTCAAAAGTCCAGGGTTGTTCGCTTGTGAGACAATCACATTTGCTGAATCGTTCTCTGGTGGAAAGCAAGTAAAAGTCTTTGTTTCCTTTGGTCACTCACTTAACAACCAGGCCCGTGGCAATGGTGCTGCTATTTGGGTGGAATCGGCAGATAGAACTCAATTCCGCGCTTGTACCTACGAGTACAGCAACGGCTCAAATTCAACTGCTAAGATAAACTGGATTGCCCTACAATCTGCTCCCATAGGAGCACAACTAGGAACCACTTCCCTGGACTCTTGGACTACCGGAACAGAATGTAAAAAGATCGACTTTCCTCAGCGTTTTGCGACTCCTCCAATCGTACTTGCGACTCCTAGTCACCAGTTTCCTAAGGGATCTCAAGACGCAATGGCAGTGTGGGTGGAAGAGTTGGCGGAAGACAGTTTTAAAATCTGTCTTAGGGAAGTGAAAATTTTCGACGGACTGCACAGAGGCATTACTATTAACTGGATGGCTTATACAAACCTTACAGTCGATAACTTCACCTTATCTGACAGTCTTGTGTTTACAAGCAACAACTCGCCATCTCAACAGATTAACTATGCTTTTTGCCAGAAAATCAACTTTACAGATCAATTCTACTCTCCCCCAGTGGTAATGGTGACAGCTGAACGGGTTAACAACGATTCATATTTATCCGGATGTAACGCCATCACTGCTTGGGTGGAGCACACGTCCGCCGCAGATACGGAAATTTGTGTCCGAACTTACGAAGCCAAGAGCAAGCAGACCATAAAAGTAGATTACCTGATTATTGGAGATCTGGATCCTTGTATAGATGTACTCTGTGACTATCATGGTTTATGCAAGGCTTTTGGACCATACGATCCCCGCTGTGTGTGCACAGACAATTGCCCACAATACCAAGAACCCGTCTGTTCTTCCAACGGAACGACGTATGACAACACGTGTCTCTTTAAACAGGAAATGTGTTTATTGCAGCTGAACTACACTGTGCAGCATCCTGGTAGTTGTGAAGGATTCCCATTTCAGCGTGACAGGCGTCACATGCCTCACATACCATCCCTCGGATACTCTCATTGTGAAGTAATTCGTTTCCGACCATTTGTGTTCTATCCTGACAAACCCATTCAAGTGCAGATAACTGTCAATCACATCGATACCAGTGATATGAACTATGTCAATGACGCCGCTGTGTCGTGGATTGAAGATGTGACCTACGAACAATTCACTGCGTGCGTGATGGCGGCAGGGTATAACGAGCGCAGGTCACGTGCTAATGTGTCCATAGACTGGATAGCTTATCAAGGAGCCCCAGTGGGTGGGGTCACTGGAGAGGTGCGCATGTCACAGTGGTGGACTGGGACAACATGCAAAGCAGTGAATTTTCCCTCGTTTTCCAAGGAGCCTTCAGTTTTTGTAACCGTTGCGCATCACCATGCTGGACTGAAGAGAGACGCCGCCAGTATTTGGTTGGAAAATATTTCGCTATCATCATTCAAGCTATGTTTGAGAGAGCTACAAAATTACGCAGGCTCACATGAAGATATTTATGTTAACTGGTTGGCCTTCTTGTCTCTTCACAAGCCTCTGTTCTCGGAACACAGCTCAATCTATTTTCCAAACTCTCAGTCACCAGGACCCTGGAACAATAACGCTTTCTGCAGGGACATTTCTTTTACCAAAGTGTACAAGAATGCCCCAAGTGTATTTGTATCAGCGAATCACACCTCCAGTGGGGGAGGCCTGAATCCAATGCACAACTCCATAACAGCTTGGGTTGAATACATCAACACAACAAGGGCTCGAGTGTGCGTAAAGGAATTGTACGCAGCAAAGTACGACCCTCTCAGTGTATCATATGCTGTCTTGTCAGATATTTGCCAGCCAGGATGGAGTTATTTTGGTGGTTACTGTTACTTCACAAGTCGTGCGTGCGCGTCATGGCTAAGAGCTCAATCAAACTGTTCTACGATGAGTTCCAATCTGGTAACAGTTCAAAATCAAGAAAAAAATGTCTACATTCAACATCGTCACAACGGAGAGAGATCTTGGATTGGACTTAATGACCGAAGTGTGGAGGGCTCCTTTGTATGGACAAACAAAGAGATAAGTAGTTTTAGGTTCTGGGCTCCACAGCAACCGAACGACTGGAGAAACGAAGACTGTGTTCACACTCTTGGTGCCAGGCATGGTTACACTTGGAATGACGTACCATGCACTAACTGCTACAACTACACCTGTTTCAAAGACCTGGATGAATGTACCACTGGTTCCCATTCCTGCGACGTCAATTCCGTTTGCCAGAATGCAGTGGGCTCATACACATGCTCGTGTAATGCTGGGTATACAGGAGATGGAAAACCATGCAATGACATCGACGAGTGTTCTACCAGCTCTCACAGCTGTGACGTCAATGCATTGTGCAGCAATATTGTGGGAACGTACGCATGCGCGTGTAAAGCAGGTTATTCAGGCGATGGAAGAACATGCGCTGGTGACTCTCGTCTTGGTTCCTCATTAGCGAAAGAAACATTCAAGTCCATCAAAAAGACACTCTGGACTTGTCCATACACTCTAGCTGCTTTTGAAAAGGCCCTAAATGACGGAGGACGCTTGAGACTCTGA

Transcript

chr8Alt.g16848.t1

AAGGAAGTCAAGGTACCATGAAGTATTTGCTTATTGAAATGTTTTAAGAATATGCTTTTAAAGCTGATATTTGATGGTCATTTTCTACGCAATCAGTTTCAAAGCTGGGAAAACCAACATCACTGTCAAAAGTCCAGGGTTGTTCGCTTGTGAGACAATCACATTTGCTGAATCGTTCTCTGGTGGAAAGCAAGTAAAAGTCTTTGTTTCCTTTGGTCACTCACTTAACAACCAGGCCCGTGGCAATGGTGCTGCTATTTGGGTGGAATCGGCAGATAGAACTCAATTCCGCGCTTGTACCTACGAGTACAGCAACGGCTCAAATTCAACTGCTAAGATAAACTGGATTGCCCTACAATCTGCTCCCATAGGAGCACAACTAGGAACCACTTCCCTGGACTCTTGGACTACCGGAACAGAATGTAAAAAGATCGACTTTCCTCAGCGTTTTGCGACTCCTCCAATCGTACTTGCGACTCCTAGTCACCAGTTTCCTAAGGGATCTCAAGACGCAATGGCAGTGTGGGTGGAAGAGTTGGCGGAAGACAGTTTTAAAATCTGTCTTAGGGAAGTGAAAATTTTCGACGGACTGCACAGAGGCATTACTATTAACTGGATGGCTTATACAAACCTTACAGTCGATAACTTCACCTTATCTGACAGTCTTGTGTTTACAAGCAACAACTCGCCATCTCAACAGATTAACTATGCTTTTTGCCAGAAAATCAACTTTACAGATCAATTCTACTCTCCCCCAGTGGTAATGGTGACAGCTGAACGGGTTAACAACGATTCATATTTATCCGGATGTAACGCCATCACTGCTTGGGTGGAGCACACGTCCGCCGCAGATACGGAAATTTGTGTCCGAACTTACGAAGCCAAGAGCAAGCAGACCATAAAAGTAGATTACCTGATTATTGGAGATCTGGATCCTTGTATAGATGTACTCTGTGACTATCATGGTTTATGCAAGGCTTTTGGACCATACGATCCCCGCTGTGTGTGCACAGACAATTGCCCACAATACCAAGAACCCGTCTGTTCTTCCAACGGAACGACGTATGACAACACGTGTCTCTTTAAACAGGAAATGTGTTTATTGCAGCTGAACTACACTGTGCAGCATCCTGGTAGTTGTGAAGGATTCCCATTTCAGCGTGACAGGCGTCACATGCCTCACATACCATCCCTCGGATACTCTCATTGTGAAGTAATTCGTTTCCGACCATTTGTGTTCTATCCTGACAAACCCATTCAAGTGCAGATAACTGTCAATCACATCGATACCAGTGATATGAACTATGTCAATGACGCCGCTGTGTCGTGGATTGAAGATGTGACCTACGAACAATTCACTGCGTGCGTGATGGCGGCAGGGTATAACGAGCGCAGGTCACGTGCTAATGTGTCCATAGACTGGATAGCTTATCAAGGAGCCCCAGTGGGTGGGGTCACTGGAGAGGTGCGCATGTCACAGTGGTGGACTGGGACAACATGCAAAGCAGTGAATTTTCCCTCGTTTTCCAAGGAGCCTTCAGTTTTTGTAACCGTTGCGCATCACCATGCTGGACTGAAGAGAGACGCCGCCAGTATTTGGTTGGAAAATATTTCGCTATCATCATTCAAGCTATGTTTGAGAGAGCTACAAAATTACGCAGGCTCACATGAAGATATTTATGTTAACTGGTTGGCCTTCTTGTCTCTTCACAAGCCTCTGTTCTCGGAACACAGCTCAATCTATTTTCCAAACTCTCAGTCACCAGGACCCTGGAACAATAACGCTTTCTGCAGGGACATTTCTTTTACCAAAGTGTACAAGAATGCCCCAAGTGTATTTGTATCAGCGAATCACACCTCCAGTGGGGGAGGCCTGAATCCAATGCACAACTCCATAACAGCTTGGGTTGAATACATCAACACAACAAGGGCTCGAGTGTGCGTAAAGGAATTGTACGCAGCAAAGTACGACCCTCTCAGTGTATCATATGCTGTCTTGTCAGATATTTGCCAGCCAGGATGGAGTTATTTTGGTGGTTACTGTTACTTCACAAGTCGTGCGTGCGCGTCATGGCTAAGAGCTCAATCAAACTGTTCTACGATGAGTTCCAATCTGGTAACAGTTCAAAATCAAGAAAAAAATGTCTACATTCAACATCGTCACAACGGAGAGAGATCTTGGATTGGACTTAATGACCGAAGTGTGGAGGGCTCCTTTGTATGGACAAACAAAGAGATAAGTAGTTTTAGGTTCTGGGCTCCACAGCAACCGAACGACTGGAGAAACGAAGACTGTGTTCACACTCTTGGTGCCAGGCATGGTTACACTTGGAATGACGTACCATGCACTAACTGCTACAACTACACCTGTTTCAAAGACCTGGATGAATGTACCACTGGTTCCCATTCCTGCGACGTCAATTCCGTTTGCCAGAATGCAGTGGGCTCATACACATGCTCGTGTAATGCTGGGTATACAGGAGATGGAAAACCATGCAATGACATCGACGAGTGTTCTACCAGCTCTCACAGCTGTGACGTCAATGCATTGTGCAGCAATATTGTGGGAACGTACGCATGCGCGTGTAAAGCAGGTTATTCAGGCGATGGAAGAACATGCGCTGGTGACTCTCGTCTTGGTTCCTCATTAGCGAAAGAAACATTCAAGTCCATCAAAAAGACACTCTGGACTTGTCCATACACTCTAGCTGCTTTTGAAAAGGCCCTAAATGACGGAGGACGCTTGAGACTCTGAGCTCTAAGCAGAGAATTCAAAGTTAAACCCCCCCCTGCCTTCCTCCACCCTTAGCCTGCGGATATCGAACAGACAGATTAAATTGAAATGAAGATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
Q28062	Brevican core protein OS=Bos taurus OX=9913 GN=BCAN PE=1 SV=1
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR052235 all species →	Family	Nephronectin domain-containing protein	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24050 all species →	PA14 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g16848.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.