Gene detail

Detailed information of g16887.t2 in Acropora digitifera

Genomic Location: chr8Alt:2900454...2908157
NR annotation: XP_029187907.2, DNA helicase MCM9-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g16887.t2

ATGCTGCCGTTATTTGACAGTGCTTTATCGCAAGCAGCTGTGACGATCATGCAGGAAAATACAACGCAGGTGTCGATGTCCTTCAAATCGAATTTGCATGTTCGTTTGTCCAATCTTCCGGTCTGTCCAGAGCTCCGCAGGGACAAAATTCCAAAGTCTTCAGACATCGGATGTTTCCTTGCTGTGTCAGGAACTATCATCAGAGTGTCAACAGTAAAGCTGCTTGAATATGAGAAGGAATACATCTGCTGCCGCTGCAAACAGGTCTTTGCAATTCAGGCTGATTTTGAGCAACACTACTCTATTCCCAAACCATCCAAGTGTCCCTCGTCAAAGGAATGTAAATCAAACAAATTTACATGTCTTTCAGAATCTGCATCAGAACCCAAAAGTTGCAGAGACTACCAAGAGATTAAAATCCAGGAACAGGTCCAGAAGCTTGCTGTTGGTACCATCCCGCGTTCCATGTGGGTGATCCTTGAAGAGGACCTGGTAGATTCTTGCAAAGCAGGTGATGATGTCACTATATGTGGTGTTGTAATGAGGAGATGGAAGCCAGTGTATGCTGATAGTCGCTGTGACCTCGAGTTAGTGCTGAAGGCAAACCACGTGTCCGTAAACAATGGACAACGCGCCGGAGTTGTTGTCACTGAAGAACTCAAACGCGAATTTGCAGAATTTTGGGAAAAACACAAGGATTCTCCTCTCCAAGCGAGGAACCATATCCTTGCCAGCTTTTGCCCGCAAGTCTATGGCTTGTATGTCGTTAAACTCGCCGTTGCCTTGGTGATCATCGGTGGAGTACAAAGAATAGACCCGTCTGGGACCCGTGTGAGAGGAGAGTCGCATTTACTGTTGGTGGGTGATCCTGGAACAGGAAAATCGCAGTTTCTCAAGTACGCTGCCAAGATCATGCCTCGTTCTGTTCTGACCACTGGCATTGGTTCAACAAGTGCTGGGCTGACTGTGGCCGCCGTGAGAGATTCCGGCGAGTGGCAGTTGGAAGCAGGGGCTTTGGTCTTAGCAGATGGTGGACTGTGCTGTATTGATGAGTTCAATAGCATTCAGGAGCACGATAGAACATGTATTCACGAAGCTATGGAGCAGCAAACAATCAGCGTGGCTAAAGCAGGAATGGTTTGCAAATTGAATACAAGAACCACCATTCTGGCTGCCACCAATCCCAAAGGGCCGTACGACCCTTCAGAGTGCCTCAGTGTAAACATTGCAGTAGCCAGTCCGCTGTTGAGTCGTTTCGATTTGCTGCTTGTCTTACATGACGCCAAAAATGAAGAGTGGGATAGAATCGTCTCGTCGTTCATCCTGGAAGGAAGGGGTCCTCGAACAACTACCGGGTCCTCGTCCGATTCGCTGTGGAGTATGGACAAGATGCAGGCGTACTTCTGTTACATTAAAACGCTGAAACCTCAGCTAACACCAGAGAGTAACAGAATTCTGAGCCGCTACTACCACTGTCAGCGGCAGGCGGATCTGCGAAATGCAGCACGCACCACTATTAGATTGCTGGAAAGTCTGATAAGATTAGCCCAGGCGCATGCGCGTTTGATGTTTCGCGAATTCGTTACTGTCCAAGACGCCATCGTAGCTGTGACATGCGTGGAATGTTCCATGCAAAACAGCGCCTTATTAGGAAATATGAACGCCTTGCATACGCGATTCCCGGATTATCCACACGAAGAATACTCGCGCCAGGCCACTCTTGTGCTGAAACGATTAAATCTGGAGGATATGATCAGTGTTATTAACGTAGCAGCTGTGGTTGAAAATGGTCGTTGCGTTCACGACAGCGAAAACAATTTGCAAGACAGGACCAACTCATGTTCTTCAAACGAATCCCTTTCAGATGATAAAGCGGCGGACGAAGACAGAAACAACTCTTCTATCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGTATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCGTTTGGATTCGGCACCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAATTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGACTGTCCAGTTTTCAAGCAAGTTTAAGAACAATCGCAAACAACAAAGGAAGTTCCTTGGAGAACGGAGTTGGTAGGGCGTTGGTGCCCTCGTCGCTTGAAAAAAGCAAAAAGATGATTGGCATGTTTTCAAAGAAGCATCATGGCGCATCTGATAACAACAATGATCGTCAGAGGGCTCCAATACATAACCTAAGCAAGCAGATTTTTGTGACCGAAGAACTCGACGATGAGGAACTGGAGGTAGAATGGCCTTCAAATTTCGTGTCAGCATCGAATGTCGATCATTCAATCTTGTCTTTGAGAGGAAGGGAAAGAACTGTTTAA

Transcript

chr8Alt.g16887.t2

GAGAGAGACTGAACACGCTAGGATAATGGCGCCTAATTTGTAACATATCTTTTGCTGACGAGTAAAAACACAGCAATCAGGGAACAATTTTTTGATCGCTGGCTCCAAGTAGTATTAACATGTCTACAGAAAGTTCTGAGGTCACAGAAGACAATCATGTGGCAGTATTCCAGTCATTTCTGGAGAAACATCACCGAGCCGACATCGCGGGGGTTCTTCTGTCTGACGATCCCTCTGCACCCTTCAGTGTTGTGGTTAATGCGTTGGAGCTCTTCGATTCCAACATAGAAGTGAGCCAAAAGTTGTTAGCTGAACCGAACAAGATGCTGCCGTTATTTGACAGTGCTTTATCGCAAGCAGCTGTGACGATCATGCAGGAAAATACAACGCAGGTGTCGATGTCCTTCAAATCGAATTTGCATGTTCGTTTGTCCAATCTTCCGGTCTGTCCAGAGCTCCGCAGGGACAAAATTCCAAAGTCTTCAGACATCGGATGTTTCCTTGCTGTGTCAGGAACTATCATCAGAGTGTCAACAGTAAAGCTGCTTGAATATGAGAAGGAATACATCTGCTGCCGCTGCAAACAGGTCTTTGCAATTCAGGCTGATTTTGAGCAACACTACTCTATTCCCAAACCATCCAAGTGTCCCTCGTCAAAGGAATGTAAATCAAACAAATTTACATGTCTTTCAGAATCTGCATCAGAACCCAAAAGTTGCAGAGACTACCAAGAGATTAAAATCCAGGAACAGGTCCAGAAGCTTGCTGTTGGTACCATCCCGCGTTCCATGTGGGTGATCCTTGAAGAGGACCTGGTAGATTCTTGCAAAGCAGGTGATGATGTCACTATATGTGGTGTTGTAATGAGGAGATGGAAGCCAGTGTATGCTGATAGTCGCTGTGACCTCGAGTTAGTGCTGAAGGCAAACCACGTGTCCGTAAACAATGGACAACGCGCCGGAGTTGTTGTCACTGAAGAACTCAAACGCGAATTTGCAGAATTTTGGGAAAAACACAAGGATTCTCCTCTCCAAGCGAGGAACCATATCCTTGCCAGCTTTTGCCCGCAAGTCTATGGCTTGTATGTCGTTAAACTCGCCGTTGCCTTGGTGATCATCGGTGGAGTACAAAGAATAGACCCGTCTGGGACCCGTGTGAGAGGAGAGTCGCATTTACTGTTGGTGGGTGATCCTGGAACAGGAAAATCGCAGTTTCTCAAGTACGCTGCCAAGATCATGCCTCGTTCTGTTCTGACCACTGGCATTGGTTCAACAAGTGCTGGGCTGACTGTGGCCGCCGTGAGAGATTCCGGCGAGTGGCAGTTGGAAGCAGGGGCTTTGGTCTTAGCAGATGGTGGACTGTGCTGTATTGATGAGTTCAATAGCATTCAGGAGCACGATAGAACATGTATTCACGAAGCTATGGAGCAGCAAACAATCAGCGTGGCTAAAGCAGGAATGGTTTGCAAATTGAATACAAGAACCACCATTCTGGCTGCCACCAATCCCAAAGGGCCGTACGACCCTTCAGAGTGCCTCAGTGTAAACATTGCAGTAGCCAGTCCGCTGTTGAGTCGTTTCGATTTGCTGCTTGTCTTACATGACGCCAAAAATGAAGAGTGGGATAGAATCGTCTCGTCGTTCATCCTGGAAGGAAGGGGTCCTCGAACAACTACCGGGTCCTCGTCCGATTCGCTGTGGAGTATGGACAAGATGCAGGCGTACTTCTGTTACATTAAAACGCTGAAACCTCAGCTAACACCAGAGAGTAACAGAATTCTGAGCCGCTACTACCACTGTCAGCGGCAGGCGGATCTGCGAAATGCAGCACGCACCACTATTAGATTGCTGGAAAGTCTGATAAGATTAGCCCAGGCGCATGCGCGTTTGATGTTTCGCGAATTCGTTACTGTCCAAGACGCCATCGTAGCTGTGACATGCGTGGAATGTTCCATGCAAAACAGCGCCTTATTAGGAAATATGAACGCCTTGCATACGCGATTCCCGGATTATCCACACGAAGAATACTCGCGCCAGGCCACTCTTGTGCTGAAACGATTAAATCTGGAGGATATGATCAGTGTTATTAACGTAGCAGCTGTGGTTGAAAATGGTCGTTGCGTTCACGACAGCGAAAACAATTTGCAAGACAGGACCAACTCATGTTCTTCAAACGAATCCCTTTCAGATGATAAAGCGGCGGACGAAGACAGAAACAACTCTTCTATCAACGTCGAGAACAATAGAGTCGTTTCACTGGACAAAAATGTATCGGTTTGTGATGAATCGGATGACTTCAATTCTCCGAGTCAATTAACAGGCGTTTGTCCGATTCAGTCTTCGTTTGGATTCGGCACCGAAGATCATCTTCGCAACGATGCGAACTGTGTCGAATCTGATCCGAGAATTGATCTCGGAGATGAAACAACTATTGGCAGAGGAGAGACAGATAACAAAACTAACGGTGATTATTTTGGGCGACTGTCCAGTTTTCAAGCAAGTTTAAGAACAATCGCAAACAACAAAGGAAGTTCCTTGGAGAACGGAGTTGGTAGGGCGTTGGTGCCCTCGTCGCTTGAAAAAAGCAAAAAGATGATTGGCATGTTTTCAAAGAAGCATCATGGCGCATCTGATAACAACAATGATCGTCAGAGGGCTCCAATACATAACCTAAGCAAGCAGATTTTTGTGACCGAAGAACTCGACGATGAGGAACTGGAGGTAGAATGGCCTTCAAATTTCGTGTCAGCATCGAATGTCGATCATTCAATCTTGTCTTTGAGAGGAAGGGAAAGAACTGTTTAATTTAGATAATGGCGGGTTTTAGTGAAAAACAACGAAAACAAATTGGAATACAAATATAATGGCCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QDI9	DNA helicase MCM9 OS=Danio rerio OX=7955 GN=mcm9 PE=3 SV=2
I0IUP4	DNA helicase MCM9 OS=Gallus gallus OX=9031 GN=MCM9 PE=1 SV=2
F6RIX4	DNA helicase MCM9 OS=Xenopus tropicalis OX=8364 GN=mcm9 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17207 all species →	MCM_OB	MCM OB domain	Domain	Interproscan
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033762 all species →	Domain	MCM OB domain	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10738	MCM9; DNA helicase MCM9	EC:5.6.2.4	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.