Gene detail

Detailed information of g16918.t1 in Montipora capitata

Genomic Location: Sc0000732:10348...24545
NR annotation: XP_029185825.2, G/T mismatch-specific thymine DNA glycosylase-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13569	G/T mismatch-specific thymine DNA glycosylase OS=Homo sapiens OX=9606 GN=TDG PE=1 SV=2
P56581	G/T mismatch-specific thymine DNA glycosylase OS=Mus musculus OX=10090 GN=Tdg PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167 all species →	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005122 all species →	Domain	Uracil-DNA glycosylase-like	Interproscan
IPR036895 all species →	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR015637 all species →	Family	Uracil DNA glycosylase family 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12159 all species →	G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000700 all species →	Molecular Function	mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0006285 all species →	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0004844 all species →	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008263 all species →	Molecular Function	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20813	TDG; thymine-DNA glycosylase	EC:3.2.2.29	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.