Gene detail

Detailed information of g17.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_037987104.1, diaminopimelate decarboxylase [Thalassospira permensis]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z661	Diaminopimelate decarboxylase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=lysA PE=3 SV=1
O67262	Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=lysA PE=1 SV=1
P44316	Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=lysA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000171 (this species only)
Orthogroup (gene family)	OG0000724 (this species only)
Orthogroup (gene family)	OG0001297 (this species only)
Orthogroup (gene family)	OG0002387 (this species only)
Orthogroup (gene family)	OG0003132 (this species only)
Orthogroup (gene family)	OG0003727 (this species only)
Orthogroup (gene family)	OG0008078 (this species only)
Orthogroup (gene family)	OG0014419 (this species only)
Orthogroup (gene family)	OG0014925 (this species only)
Orthogroup (gene family)	OG0014944 (this species only)
Orthogroup (gene family)	OG0048247 (this species only)
Orthogroup (gene family)	OG0080353 (this species only)
Orthogroup (gene family)	OG0171621 (this species only)
Orthogroup (gene family)	OG0174551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF01457 all species →	Peptidase_M8	Leishmanolysin	Family	Interproscan
PF14798 all species →	Ca_hom_mod	Calcium homeostasis modulator	Family	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00806 all species →	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan
PF02434 all species →	Fringe	Fringe-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR050182 all species →	Family	Cytochrome P450 family 2	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR001577 all species →	Family	Peptidase M8, leishmanolysin	Interproscan
IPR029569 all species →	Family	Calcium homeostasis modulator family	Interproscan
IPR002986 all species →	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR000183 all species →	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022653 all species →	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR033712 all species →	Domain	Pumilio, RNA binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR033133 all species →	Domain	Pumilio homology domain	Interproscan
IPR003378 all species →	Domain	Fringe-like, glycosyltransferase domain	Interproscan
IPR026050 all species →	Family	C1GALT1/C1GALT1-specific chaperone 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24300 all species →	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR10942 all species →	LEISHMANOLYSIN-LIKE PEPTIDASE	Interproscan
PTHR32261 all species →	CALCIUM HOMEOSTASIS MODULATOR PROTEIN	Interproscan
PTHR43727 all species →	DIAMINOPIMELATE DECARBOXYLASE	Interproscan
PTHR12537 all species →	RNA BINDING PROTEIN PUMILIO-RELATED	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23033 all species →	BETA1,3-GALACTOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006082 all species →	Biological Process	organic acid metabolic process	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008836 all species →	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0010608 all species →	Biological Process	post-transcriptional regulation of gene expression	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0016263 all species →	Molecular Function	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	Interproscan
GO:0016267 all species →	Biological Process	core 1 O-glycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01586	lysA; diaminopimelate decarboxylase	EC:4.1.1.20	D-Amino acid metabolism	ko00470	deepkoala
K13539	LMLN; leishmanolysin-like peptidase	EC:3.4.24.-	Chromosome and associated proteins	ko03036	deepkoala
K17943	PUM; pumilio RNA-binding family	-	Spinocerebellar ataxia	ko05017	deepkoala
K19739	CALHM2; calcium homeostasis modulator protein 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.