Gene detail

Detailed information of g17.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_037987104.1, diaminopimelate decarboxylase [Thalassospira permensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9Z661	Diaminopimelate decarboxylase OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=lysA PE=3 SV=1
O67262	Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=lysA PE=1 SV=1
P44316	Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=lysA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF01457	Peptidase_M8	Leishmanolysin	Family	Interproscan
PF14798	Ca_hom_mod	Calcium homeostasis modulator	Family	Interproscan
PF00278	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF02784	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00806	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan
PF02434	Fringe	Fringe-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128	Family	Cytochrome P450	Interproscan
IPR050182	Family	Cytochrome P450 family 2	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR001577	Family	Peptidase M8, leishmanolysin	Interproscan
IPR029569	Family	Calcium homeostasis modulator family	Interproscan
IPR002986	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR000183	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022643	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022653	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR022644	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR001313	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR033712	Domain	Pumilio, RNA binding domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR033133	Domain	Pumilio homology domain	Interproscan
IPR003378	Domain	Fringe-like, glycosyltransferase domain	Interproscan
IPR026050	Family	C1GALT1/C1GALT1-specific chaperone 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24300	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR10942	LEISHMANOLYSIN-LIKE PEPTIDASE	Interproscan
PTHR32261	CALCIUM HOMEOSTASIS MODULATOR PROTEIN	Interproscan
PTHR43727	DIAMINOPIMELATE DECARBOXYLASE	Interproscan
PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23033	BETA1,3-GALACTOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006082	Biological Process	organic acid metabolic process	Interproscan
GO:0006805	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0005261	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0008836	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0010608	Biological Process	post-transcriptional regulation of gene expression	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan
GO:0016263	Molecular Function	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	Interproscan
GO:0016267	Biological Process	core 1 O-glycan biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19739	CALHM2; calcium homeostasis modulator protein 2	-	D-Amino acid metabolism	ko00470	deepkoala
			Spinocerebellar ataxia	ko05017	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Transporters	ko02000	deepkoala