Detailed information of g1706.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB3985396.1, uncharacterized protein LOC109194877 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P0CV72Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05970PIF1PIF1-like helicaseFamilyInterproscan
PF00412LIMLIM domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051055FamilyPIF1 DNA helicaseInterproscan
IPR010285FamilyDNA helicase Pif1-likeInterproscan
IPR001781DomainZinc finger, LIM-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47642ATP-DEPENDENT DNA HELICASEInterproscan
PTHR24210LIM DOMAIN-CONTAINING PROTEINInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0045216Biological Processcell-cell junction organizationInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:1900026Biological Processpositive regulation of substrate adhesion-dependent cell spreadingInterproscan
GO:2001046Biological Processpositive regulation of integrin-mediated signaling pathwayInterproscan

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