Gene detail

Detailed information of g17096.t1 in Acropora digitifera

Genomic Location: chr8Alt:5405685...5409019
NR annotation: XP_029207473.2, lysine-specific demethylase 2B-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g17096.t1

ATGCACTATCCAAATTTCCAAGACAGACATTCTGGCATGAAAATCAAGGGAAAGAAAAAGGGAAAATTGCCAAAAAGTCACCATGGAAAGCAGTTCTCACCACCACAAGGACGGAGTGGAATCTCACATCAGAATGGTGGGATTGTTAATAACACTAACCATAGGGAAAGCTCCATCCACTTGCCGCTAAAAGAATTTGAAGTTCCTGATTTCTTGAAAGACACCCAATCTCAGCCACGTCAAGGAAATAGCTCTCCAGTTGTCAAGCGGGATCTGAAAGATTCAGATTTCTCAACAATGAATGGATCAGGATTAATGATACCTAGGAAGGAGTTAACAATTCCAGATTTTCTCAGGAGCAAGGATGAAAGTGACAGAAACAGTGCTGTAGAAAATCAAGGGAGAGGGCAGAAGCTTAGGGCTTCTCATGACAGAACACCGAGAAATAGTGAAAGAGATTACAGGAAAATGAATGGAGAACACAAAGCACATGAACACTCAACTGAGCAAAAACAACACCAGGAAGGAAAACGCATGCCGAAACTGCAGGAGAACAGCCAGGTTGTAGAAGGAGCAATTATTAGAGGGCACAATGGTACAAGTGCTGTCTCGCTAGAAAGGCTAGGGCCATCTGCAAAGAGTCAGTTAAAAACTGTTAATCGACAAAAGTCACATAACTGGATGGAAACTGACAGCTTGCAAAGTTCTTCTTCACATTCACTTACTGAACCAATTTCTACCATGTCATCTGACAAAGATAAATTCAGTGTTTCTGTGCGGGATCATAGTGAGCTTGTTCGAAAAGGAATTATTTCCAATGGAACTCTTTCCTCTGTTGGCAAGTATCATTTACATGGTGCTGCTGACAGTTATGTTGAAGACGACGTGGATTCACCTCTATCCACAGAGAGAAGCAGTAATTTCAATTCCAGCATTGGTTACAATGAAAGCTCGCCTGAGCAATCCAATCGTAAGGTTAAGAGAAAGGACTCTTTGCAAGCCCGTCTCCGCAGCAGAATTACTAAACAGGAGAGAGCAAACAAGTCTGTTCCAAGAGTTAGGTATGACAGTGACTCCACTACAGTCAGTGATCACAGTGCATTCGGGGATGTCACTCCGATGTACTCTTCCCGGAGAAAATCAACTCCTGGATTAAATTCGTTGAATGACCTTCCAGAAGATCTTCTGATCTTCATCTTTTCTCATTTACCGTCAAGAGATCTTTGCAGGGCATCAGGTGTATGCTCCAAATGGCAGAAATTGTGCTGGGACCCATTGCTCTGGTCAACCATTAGTATTAGTAATTACCAAGACAGTGATATCAATAAAGTGCTTCGAACCATCTTGACCAAGTTAGCAATGGACACTCAGGGTTATTGCCTCAATGTACTCACAATCAAATTGAATGGCTGCGAACTTCTGGCCGACAAAGGCCTGGGATTTATTGCGCGATTTTGTATCGATCTTGAAGGCCTCGATGTCTCTGGTTGTTGTTGTATCACAAGCAAAGGACTGCACGAGGTCTTAACAAATTGCCGAGCAGTTACTCAGCTGAACGTCACTGGGTGTACTTGTGTCAATAGCTTATCAGCTCCTGTCGCAGTAGCCAATGGTTTGGGCTTGGGGCAGAATGGTACAAGCCTCAAATTGAGGCACTTAGATTTGAGTGACTGTGCAGCTTTTGATGATCTGGGTCTTAGAGTTGTCAGTCTGAGCTGTGGATTACTAGAAAGCCTCTACCTTCGCAGATGCAATCGTGTTACAGATGTTGGCATCAAACACGTCGCTCAGCACTGTTCTCGGCTTAAAGAACTGAGCATCAGTGACTGTTTTAAAGTGAGGGATTTTAGCTTGAAAGAAATAGCCAAGCACTGTGCAAGCTTGAAGTATCTTAGTGCAGCAAAATGTCCAGTGACTGATACTGGCATAAAACTCATTGGAAAACACTGCATTAAGTTGAAGTACGTGAACATCAGAGGCTGCGAAGCTGTGACTGATGTCGGCATAACCCACATTGTTCAAAACTGTTTGAAACTGAGATCGCTTGATGCCGGCAAGTGTGACATCACTGATAATGGGTTACACATCATCGGCATTCATTGCCCTCAGCTTAAGAAACTGAGTGTGCGGGGTTGCGATCGTGTGACAGACATGGGCATCAGGACCATTGCTGCACAGTGTTGTAGCTTGCAGTACTTGAATGTACAAGAATGCAGCTTGAATTACAAAACTTTCATGTACATCAGGGAGCATTGTAAAAACTGTGTTATTGAACACACCTGTCCTGCATTTTTCTAG

Transcript

chr8Alt.g17096.t1

ATGTCTTAAAGGTATTGTTGTAAAAATATGCACTATCCAAATTTCCAAGACAGACATTCTGGCATGAAAATCAAGGGAAAGAAAAAGGGAAAATTGCCAAAAAGTCACCATGGAAAGCAGTTCTCACCACCACAAGGACGGAGTGGAATCTCACATCAGAATGGTGGGATTGTTAATAACACTAACCATAGGGAAAGCTCCATCCACTTGCCGCTAAAAGAATTTGAAGTTCCTGATTTCTTGAAAGACACCCAATCTCAGCCACGTCAAGGAAATAGCTCTCCAGTTGTCAAGCGGGATCTGAAAGATTCAGATTTCTCAACAATGAATGGATCAGGATTAATGATACCTAGGAAGGAGTTAACAATTCCAGATTTTCTCAGGAGCAAGGATGAAAGTGACAGAAACAGTGCTGTAGAAAATCAAGGGAGAGGGCAGAAGCTTAGGGCTTCTCATGACAGAACACCGAGAAATAGTGAAAGAGATTACAGGAAAATGAATGGAGAACACAAAGCACATGAACACTCAACTGAGCAAAAACAACACCAGGAAGGAAAACGCATGCCGAAACTGCAGGAGAACAGCCAGGTTGTAGAAGGAGCAATTATTAGAGGGCACAATGGTACAAGTGCTGTCTCGCTAGAAAGGCTAGGGCCATCTGCAAAGAGTCAGTTAAAAACTGTTAATCGACAAAAGTCACATAACTGGATGGAAACTGACAGCTTGCAAAGTTCTTCTTCACATTCACTTACTGAACCAATTTCTACCATGTCATCTGACAAAGATAAATTCAGTGTTTCTGTGCGGGATCATAGTGAGCTTGTTCGAAAAGGAATTATTTCCAATGGAACTCTTTCCTCTGTTGGCAAGTATCATTTACATGGTGCTGCTGACAGTTATGTTGAAGACGACGTGGATTCACCTCTATCCACAGAGAGAAGCAGTAATTTCAATTCCAGCATTGGTTACAATGAAAGCTCGCCTGAGCAATCCAATCGTAAGGTTAAGAGAAAGGACTCTTTGCAAGCCCGTCTCCGCAGCAGAATTACTAAACAGGAGAGAGCAAACAAGTCTGTTCCAAGAGTTAGGTATGACAGTGACTCCACTACAGTCAGTGATCACAGTGCATTCGGGGATGTCACTCCGATGTACTCTTCCCGGAGAAAATCAACTCCTGGATTAAATTCGTTGAATGACCTTCCAGAAGATCTTCTGATCTTCATCTTTTCTCATTTACCGTCAAGAGATCTTTGCAGGGCATCAGGTGTATGCTCCAAATGGCAGAAATTGTGCTGGGACCCATTGCTCTGGTCAACCATTAGTATTAGTAATTACCAAGACAGTGATATCAATAAAGTGCTTCGAACCATCTTGACCAAGTTAGCAATGGACACTCAGGGTTATTGCCTCAATGTACTCACAATCAAATTGAATGGCTGCGAACTTCTGGCCGACAAAGGCCTGGGATTTATTGCGCGATTTTGTATCGATCTTGAAGGCCTCGATGTCTCTGGTTGTTGTTGTATCACAAGCAAAGGACTGCACGAGGTCTTAACAAATTGCCGAGCAGTTACTCAGCTGAACGTCACTGGGTGTACTTGTGTCAATAGCTTATCAGCTCCTGTCGCAGTAGCCAATGGTTTGGGCTTGGGGCAGAATGGTACAAGCCTCAAATTGAGGCACTTAGATTTGAGTGACTGTGCAGCTTTTGATGATCTGGGTCTTAGAGTTGTCAGTCTGAGCTGTGGATTACTAGAAAGCCTCTACCTTCGCAGATGCAATCGTGTTACAGATGTTGGCATCAAACACGTCGCTCAGCACTGTTCTCGGCTTAAAGAACTGAGCATCAGTGACTGTTTTAAAGTGAGGGATTTTAGCTTGAAAGAAATAGCCAAGCACTGTGCAAGCTTGAAGTATCTTAGTGCAGCAAAATGTCCAGTGACTGATACTGGCATAAAACTCATTGGAAAACACTGCATTAAGTTGAAGTACGTGAACATCAGAGGCTGCGAAGCTGTGACTGATGTCGGCATAACCCACATTGTTCAAAACTGTTTGAAACTGAGATCGCTTGATGCCGGCAAGTGTGACATCACTGATAATGGGTTACACATCATCGGCATTCATTGCCCTCAGCTTAAGAAACTGAGTGTGCGGGGTTGCGATCGTGTGACAGACATGGGCATCAGGACCATTGCTGCACAGTGTTGTAGCTTGCAGTACTTGAATGTACAAGAATGCAGCTTGAATTACAAAACTTTCATGTACATCAGGGAGCATTGTAAAAACTGTGTTATTGAACACACCTGTCCTGCATTTTTCTAGTCCAGTAGGGATTCACATTTTTAAACCAAACAGAGAATTTAAATACACAGTTTCAAAAATGGCAAAATTATTATTGGATCAAATAAAGAAGGTGCTGTTGTTCCTAACTCCACTGGATACAGTACTTTTTTGAAAAGTGGTTCCTTTCAATGGCAAACCATATATAAAGAACAAAGTGCACCTTAAAAAAAAAAAAAGACCTCCTCACTCAGTAGGAAGGCTCACTGTTGTAGTTATCTACTGTTCTTCAAAGAAAAAAAAGGCTGATATGTGGAAGGCATTGTGAAACTACTTTTCGAATATATCTCATGTACGTTGTTTGCTTTGTGTTTTGATACAAAGGGAAACAGTTACAACTAACCTCACATTTTGAAAGTAAGCTATTTTTGCATCAATGTTGTGGAAAGCTTTTGTTCAAAGCAGTGGTTGGGTTTTAAGGATTTAACCAAGATTATTGGGTTCTTGTGTAGACAAGGATAGTTGCACTCATATTCTGCAAGACATGCCCTCCAGGCAAAAAATTAATTAATAAAACACAATTAAAGACTGTTGTTCAGGTATGTTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10273	FBXL7; F-box and leucine-rich repeat protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.