Gene detail

Detailed information of g17160.t1 in Montipora capitata

Genomic Location: Sc0000756:64632...111514
NR annotation: XP_044173296.1, unconventional myosin-Va-like isoform X1 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g17160.t1

atgactacactagaactcttcacgaagggggcaagagtgtggattcctcacagtcaagttgtatggattggtggggaattaacgagggatttaggagaaaatggcacattggaaattgagctcgaagacggaaatgaaattactatcgatgtttcgaaggataaatcaaagttacctcccttgaggaaccctgaagttttggtgggcgaaaatgacctcacaacgctcagttaccttcacgaaccggcggtgttgtacaatcttcaagttcgtttcctgcagtcaaatgaaatttacacttactgtggtattgtgctggttgccattaacccttatcagcaactgcctttgtacagccctgacattattgcagcttacagtggacaatccatgggtgacatggacccgcacatatttgctgtggctgaagatgcatttagagcaatggcaagggataaacagaaccagtcaatcattgtgagtggggaaagtggggctggaaagacagtcagtgctaaatatgcaatgaggtattttgcatcagtgggaggagcctccaatgaaacacaagttgaaaagaaggttttggcttcaaatcccatcatggaggccattggaaatgcaaagacaatacgaaatgacaatagcagccgatttggaaaatacctggaaatatcttttgacaagaaccatcacataaatggtgcacacatgagaacatatttgctggaaaaatcaagagttgtgttccaagcagaagatgaaagaaactatcacatcttttaccagctttgtgctgctagtgaccttccagaactcaaggacctcagacttggacaccaagacaactttaattacttaaaccaaggagagtgtccctatgttgctgatgttgatgatggtgaagggtttgaggagatgtgtgaagctatggatctggtgggaatcatggaagatcaacagcaaatgatatttaggatcttagctggcattttgcacattgggaacatagatattcagccagctggagatgaagagagtgaaattaatgataaagatgttcatcttgcaattgcagctgaactttttggtgtagatagaaatcaacttaagaagtggatgtgtaaccggaagatagtcactgtgcaagaagtgttgatcaaaccactcaatgttgatgaggcaaattttgggagagaagcaatcagcaaacacatttattctcagctgttcaagtggattgtgcagtgtataaacaattctcttaccagcaatgtcaaacagcatcattcatttcttggaattcttgatatttatggatttgaaacatttgatgtgaacagttttgaacaattctgtattaattatgcaaatgaaaagcttcagcagcagttcactcaacatgtgttcaaactggaacaagaagagtatgtgaaagaagagattgagtggtcattcattaacttctatgataaccagccctgcattgacttgattgaatcaaagcttggaatcctagacttattggatgaagaatgcaagatgcccaaaggttccgataggtcatggattcagaagctgtacaagaatcacttaaagaaaaagcactttagcaagccacggatgtcagaaacagcatttattgtgcatcattttgccgacgatgtcgagtacgaagtcagggggtttgttgagaaaaatcgcgacactattaatcaagaacatttggcaatcctcaaagcaagcgagtatgagctggtggcccgagtgattcagtttacacactacgagactgttgcagacttgttcactgataatgaagctcatttgatgcctcgtaaaagaactacttccaggtctggcaaaaatgtcactaaaacgaagaggagtgtgggatcagagtttcgtgaatccctgtccaagcttatgacaacactcaacagtacagtaccacattatattcgctgcatcaaaccaaacgatcgcaaagccccatttgaattcaacccacaacgtagcattcaacagctacgtgcatgcggagttctggagactgtgcggattagcgccgcaggctacccctccaggtggagatacccagagttctttgcccgttacagaatgctactgaaattcaaggacattaatcgaaagaaaccttacaacactattagggctattttagagaccttcatcaaggaccctgataaatttcaaatgggcaaaaccaagatattttttcgtgccggacaggttgcttacttagagaagttacgagccgacaagctgcgtgacagctgcattatgatccaaaagaatttccgttgttggagagaccggcgcctctatttgagaatgaggcagtctgcgatcctcatacaggcctgggtacgaggatatcttgcgagaaggcttgcgcaggatctgcgcgagaagagggctgcaatcataatccaaaggtcttttcgtggttatatttgccgaaaacgattcgtgtcaatccgggaagccgtgcttacaattcagtgctacacgcgaggaatgtttgccagacgccttaaaatgcatcttttgtgcgttgccaaagcgaagatcatccagggttgttggcgaaggtacaaagcgagaaagagctacaggaattacaagaaaactatcatctatttacagtcatgtgtccgcagagtgattgctaggcgacaactcaagcagctgaagatcgaagcacgctctgttgaacattacaagaagctgaatattgggatggagaacaaaatcattcacttacaacaacgcctcgacgaacaggttaaagaaaaagaacaagctcaagtcgctgtccgggaacttgaagcaacgcggaaagaaatggaacacgccaagcagtggaaaggacagtttgaatcaactcaggtcaaggtgctcgagttagaactgcaagtcaaggaattaaaagaggaactgaatacggctatcgtagagaaagaagaaagcaaaaaacaggctaaaactgagaaagagcagcttgaagagataaacgaaaagctcaaggaggaattggtgaaattcaaagatgagctcgccgaaaccaaagcaatcacggaaagagaagtttcgcttagagacgaaattgttacccagagtcttgaagctcaaagggaacagcttttagcagaatttgaatctgaacggaccaatcatcagcgagtattgagagattatgatcggcttgagcagcgctatcaaaatcttcaggatgaaatggaaattgagaaattgagcccactgccacacagaggactacttgggacaggcatggatgaaattcaaagagacttcgatggcttgctaactgccagtagctcagaggcttcactggtcgatgctatggagttggaggaaaggcaaagtgaaacgccggaatctacagtgaaaaagaaaaagttgatgcgcggaatgaaaaagagaataagggaattagaagacaaactatgggaatacgaacaatcgcaagctgatgcgtcgagcatcaatgtgattacaccacccacagaagaccagatcgttgagtctgaaaaatatcaaaacgctctgaaggagagagaaactttagagaaagaaaaaatacaactcgaggtagaaagcaaaaaaataaattcggaacttcaacttttgaggaaacttgtaagtcaaaggaatattgacaaggaagctgagtgggacatgattaatgaaaagatgaacgaaattggcgctgaaagaaaccagttagagaacgagaagaaccgcttaagacgagaacttatttcaatggcatctgtggctagcgacatgcataatgcagaggaattgttaagaactaacccagatgaaagcgcgtatgtgatgcaggcacagagtttgaagaaagctaacaatgtcttgcaaaatgaacttcacgatttattaaagaaagaagaagacttgaagaaagctaacgaaaagctgtggatggaaaaagctgatctgcaaagggggcgaggcacgtcgctttcgtcaatggatggaaattttaataaagaagtttctcgattggtgacagagaacgtggagcttaaggaacaagttgaaaaactggaagtggagctcgaggaattcaagcagggtgggacgggaatggctttggcaccgttcagaggaagaacgcagtcttacaagggtgaacttgagcagaagagaagagcgcaaagctttttagctggacaggaacccaaagcaggaaaattggtcatgcgacacgctggtcttcttcggaaatcctcccacgcccaaaaggaaggggacttgcttcctcttccccctcaactgaaacctcaaaaagtgcgtggtatgattgagttcgcaagcgatgacgaagacaacgttattaaatatttgattactgaaatggaccccaaatccatggcggatgctattccagggctccctgcacacattcttttcatgtgcatccggcatgctgaccacgtgaatgacgaccgacgcatgcaaagtctgctgaccaatagtatcaacagcatcaggaaagtcgtcaagaaaagtccgagtaacctggacattttggcattttggctggcgaacacttctcgacttcttcatgatatgaaacagtacagtggggatcgggtgtttcaagttcacaacactccagagcaaaacgaacattgtctgaagaactttgacctgacggattaccgacaggtgctgagtgacctggcaatccatatctatcaggatctggtgaaatgtatctgggaagctattcaggccatgattgttcctggcatgcttgaatacgagtccattcccggagtatcaacctccaaaccgtttggtggtcgaacaaaatctcatgctgacatcacggtcaaatcgatcacacatatgttgaccgatttccttgctattctcaattctcactgcgtggatcctgagattattaaacaagttttcagacagttattttacaacattggcgcgaacatgatgaacaatctcttactgagaaaagacatgtgtcattggtccagaggaatgcaaatcagatttaacctgagtcagcttgaggactgggtgcgactcaatcaacttgaaggcagcggtattgttgaggctttagagaatgttattcaagccacaaagcttcttcaagttaacaagaagaccttggaggacgtggaagctatatgtgaagtgtgcagctctcttaatacccttcaggttcagaagattctttccatgtacacaccagccaatgaatacgaggctcgtgttccgtcgtcagtgattcgtgcagtggtagagcgcgggcataataagacggagccaatgttccttatgaatgatacagcttacatgtatccctttacactgcctttcacgccttctgctgtgtccttggaatcaatcaacatccctgaaagtctcaaccttgattttctgaaggtggtgtaa

Transcript

g17160.t1

ATGACTACACTAGAACTCTTCACGAAGGGGGCAAGAGTGTGGATTCCTCACAGTCAAGTTGTATGGATTGGTGGGGAATTAACGAGGGATTTAGGAGAAAATGGCACATTGGAAATTGAGCTCGAAGACGGAAATGAAATTACTATCGATGTTTCGAAGGATAAATCAAAGTTACCTCCCTTGAGGAACCCTGAAGTTTTGGTGGGCGAAAATGACCTCACAACGCTCAGTTACCTTCACGAACCGGCGGtgTTGTACAATCTTCAAGTTCGTTTCCTGCAGTCAAATGAAATTTACACTTACTGTGGTATTGTGCTGGTTGCCATTAACCCTTATCAGCAACTGCCTTTGTACAGCCCTGACATTATTGCAGCTTACAGTGGACAATCCATGGGTGACATGGACCCGCACATATTTGCTGTGGCTGAAGATGCATTTAGAGCAATGGCAAGGGATAAACAGAACCAGTCAATCATTGTGAGTGGGGAAAGTGGGGCTGGAAAGACAGTCAGTGCTAAATATGCAATGAGGTATTTTGCATCAGTGGGAGGAGCCTCCAATGAAACACAAGTTGAAAAGAAGGTTTTGGCTTCAAATCCCATCATGGAGGCCATTGGAAATGCAAAGACAATACGAAATGACAATAGCAGCCGATTTGGAAAATACCTGGAAATATCTTTTGACAAGAACCATCACATAAATGGTGCACACATGAGAACatatttgctggaaaaatcaaGAGTTGTGTTCCAAGCAGAAGATGAAAGAAACTATCACATCTTTTACCAGCTTTGTGCTGCTAGTGACCTTCCAGAACTCAAGGACCTCAGACTTGGACACCAAGACAACTTTAATTACTTAAACCAAGGAGAGTGTCCCTATGTTGCTGATGTTGATGATGGTGAAGGGTTTGAGGAGATGTGTGAAGCTATGGATCTGGTGGGAATCATGGAAGATCAACAGCAAATGATATTTAGGATCTTAGCTGGCATTTTGCACATTGGGAACATAGATATTCAGCCAGCTGGAGATGAAGAGAGTGAAATTAATGATAAAGATGTTCATCTTGCAATTGCAGCTGAACTTTTTGGTGTAGATAGAAATCAACTTAAGAAGTGGATGTGTAACCGGAAGATAGTCACTGTGCAAGAAGTGTTGATCAAACCACTCAATGTTGATGAGGCAAATTTTGGGAGAGAAGCAATCAGCAAACACATTTATTCTCAGCTGTTCAAGTGGATTGTGCAGTGTATAAACAATTCTCTTACCAGCAATGTCAAACAGCATCATTCATTTCTTGGAATTCTTGATATTTATGGatTTGAAACATTTGATGTGAACAGTTTTGAACAATTCTgtattaattatgcaaatgaaaAGCTTCAGCAGCAGTTCACTCAACATGTGTTCAAACTGGAACAAGAAGAGTATGTGAAAGAAGAGATTGAGTGGTCATTCATTAACTTCTATGATAACCAGCCCTGCATTGACTTGATTGAATCAAAGCTTGGAATCCTAGACTTATTGGATGAAGAATGCAAGATGCCCAAAGGTTCCGATAGGTCATGGATTCAGAAGCTGTACAAGAATCACTTAAAGAAAAAGCACTTTAGCAAGCCACGGATGTCAGAAACAGCATTTATTGTGCATCATTTTGCCGACGATGTCGAGTACGAAGTCAGGGGGTTTGTTGAGAAAAATCGCGACACTATTAATCAAGAACATTTGGCAATCCTCAAAGCAAGCGAGTATGAGCTGGTGGCCCGAGTGATTCAGTTTACACACTACGAGACTGTTGCAGACTTGTTCACTGATAATGAAGCTCATTTGATGCCTCGTAAAAGAACTACTTCCAGGTCTGGCAAAAATGTCACTAAAACGAAGAGGAGTGTGGGATCAGAGTTTCGTGAATCCCTGTCCAAGCTTATGACAACACTCAACAGTACAGTACCACATTATATTCGCTGCATCAAACCAAACGATCGCAAAGCCCCATTTGAATTCAACCCACAACGTAGCATTCAACAGCTACGTGCATGCGGAGTTCTGGAGACTGTGCGGATTAGCGCCGCAGGCTACCCCTCCAGGTGGAGATACCCAGAGTTCTTTGCCCGTTACAGAATGCTACTGAAATTCAAGGACATTAATCGAAAGAAACCTTACAACACTATTAGGGCTATTTTAGAGACCTTCATCAAGGACCCTGATAAATTTCAAATGGGCAAAACCAAGATATTTTTTCGTGCCGGACAGGTTGCTTACTTAGAGAAGTTACGAGCCGACAAGCTGCGTGACAGCTGCATTATGATCCAAAAGAATTTCCGTTGTTGGAGAGACCGGCGCCTCTATTTGAGAATGAGGCAGTCTGCGATCCTCATACAGGCCTGGGTACGAGGATATCTTGCGAGAAGGCTTGCGCAGGATCTGCGCGAGAAGAGGGCTGCAATCATAATCCAAAGGTCTTTTCGTGGTTATATTTGCCGAAAACGATTCGTGTCAATCCGGGAAGCCGTGCTTACAATTCAGTGCTACACGCGAGGAATGTTTGCCAGACGCCTTAAAATGCATCTTTTGTGCGTTGCCAAAGCGAAGATCATCCAGGGTTGTTGGCGAAGGTACAAAGCGAGAAAGAGCTACAGGAATTACAAGAAAACTATCATCTATTTACAGTCATGTGTCCGCAGAGTGATTGCTAGGCGACAACTCAAGCAGCTGAAGATCGAAGCACGCTCTGTTGAACATTACAAGAAGCTGAATATTGGGATGGAGAACAAAATCATTCACTTACAACAACGCCTCGACGAACAGgttaaagaaaaagaacaagctCAAGTCGCTGTCCGGGAACTTGAAGCAACGCGGAAAGAAATGGAACACGCCAAGCAGTGGAAAGGACAGTTTGAATCAACTCAGGTCAAGGTGCTCGAGTTAGAACTGCAAGTCAAGGAATTAAAAGAGGAACTGAATACGGCTATCGTagagaaagaagaaagcaaaaaacagGCTAAAACTGAGAAAGAGCAGCTTGAAGAGATAAACGAAAAGCTCAAGGAGGAATTGGTGAAATTCAAAGATGAGCTCGCCGAAACCAAAGCAATCACGGAAAGAGAAGTTTCGCTTAGAGACGAAATTGTTACCCAGAGTCTTGAAGCTCAAAGGGAACAGCTTTTAGCAGAATTTGAATCTGAACGGACCAATCATCAGCGAGTATTGAGAGATTATGATCGGCTTGAGCAGCGCTATCAAAATCTTCAGGATGAAATGGAAATTGAGAAATTGAGCCCACTGCCACACAGAGGACTACTTGGGACAGGCATGGATGAAATTCAAAGAGACTTCGATGGCTTGCTAACTGCCAGTAGCTCAGAGGCTTCACTGGTCGATGCTATGGAGTTGGAGGAAAGGCAAAGTGAAACGCCGGAATCtacagtgaaaaagaaaaagttgatgcGCGGAATGAAAAAGAGAATAAGGGAATTAGAAGACAAACTATGGGAATACGAACAATCGCAAGCTGATGCGTCGAGCATCAATGTGATTACACCACCCACAGAAGACCAGATCGTTGAGTCTGAAAAATATCAAAACGCTCTGAAGGAGAGAGAAActttagagaaagaaaaaatacaacTCGAGgtagaaagcaaaaaaataaattcggaACTTCAACTTTTGAGGAAACTTGTAAGTCAAAGGAATATTGACAAGGAAGCTGAGTGGGACATGATTAATGAAAAGATGAACGAAATTGGCGCTGAAAGAAACCAGTTAGAGAACGAGAAGAACCGCTTAAGACGAGAACTTATTTCAATGGCATCTGTGGCTAGCGACATGCATAATGCAGAGGAATTGTTAAGAACTAACCCAGATGAAAGCGCGTATGTGATGCAGGCACAGAGTTTGAAGAAAGCTAACAATGTCTTGCAAAATGAACTTCACGATTTATTAAAGAAAGAAGAAGACTTGAAGAAAGCTAACGAAAAGCTGTGGATGGAAAAAGCTGATCTGCAAAGGGGGCGAGGCACGTCGCTTTCGTCAATGGATGGAAATTTTAATAAAGAAGTTTCTCGATTGGTGACAGAGAACGTGGAGCTTAAGGAACAAGTTGAAAAACTGGAAGTGGAGCTCGAGGAATTCAAGCAGGGTGGGACGGGAATGGCTTTGGCACCGTTCAGAGGAAGAACGCAGTCTTACAAGGGTGAACTTGAGCAGAAGAGAAGAGCGCAAAGCTTTTTAGCTGGACAGGAACCCAAAGCAGGAAAATTGGTCATGCGACACGCTGGTCTTCTTCGGAAATCCTCCCACGCCCAAAAGGAAGGGGACTTGCTTCCTCTTCCCCCTCAACTGAAACCTCAAAAAGTGCGTGGTATGATTGAGTTCGCAAGCGATGACGAAGACAACGTTATTAAATATTTGATTACTGAAATGGACCCCAAATCCATGGCGGATGCTATTCCAGGGCTCCCTGCACACATTCTTTTCATGTGCATCCGGCATGCTGACCACGTGAATGACGACCGACGCATGCAAAGTCTGCTGACCAATAGTATCAACAGCATCAGGAAAGTCGTCAAGAAAAGTCCGAGTAACCTGGACATTTTGGCATTTTGGCTGGCGAACACTTCTCGACTTCTTCATGATATGAAACAGTACAGTGGGGATCGGGTGTTTCAAGTTCACAACACTCCAGAGCAAAACGAACATTGTCTGAAGAACTTTGACCTGACGGATTACCGACAGGTGCTGAGTGACCTGGCAATCCATATCTATCAGGATCTGGTGAAATGTATCTGGGAAGCTATTCAGGCCATGATTGTTCCTGGCATGCTTGAATACGAGTCCATTCCCGGAGTATCAACCTCCAAACCGTTTGGTGGTCGAACAAAATCTCATGCTGACATCACGGTCAAATCGATCACACATATGTTGACCGATTTCCTTGCTATTCTCAATTCTCACTGCGTGGATCCTGAGATTATTAAACAAGTTTTCAGACAGTTATTTTACAACATTGGCGCGAACATGATGAACAATCTCTTACTGAGAAAAGACATGTGTCATTGGTCCAGAGGAATGCAAATCAGATTTAACCTGAGTCAGCTTGAGGACTGGGTGCGACTCAATCAACTTGAAGGCAGCGGTATTGTTGAGGCTTTAGAGAATGTTATTCAAGCCACAAAGCTTCTTCAAGTTAACAAGAAGACCTTGGAGGACGTGGAAGCTATATGTGAAGTGTGCAGCTCTCTTAATACCCTTCAGGTTCAGAAGATTCTTTCCATGTACACACCAGCCAATGAATACGAGGCTCGTGTTCCGTCGTCAGTGATTCGTGCAGTGGTAGAGCGCGGGCATAATAAGACGGAGCCAATGTTCCTTATGAATGATACAGCTTACATGTATCCCTTTACACTGCCTTTCACGCCTTCTGCTGTGTCCTTGGAATCAATCAACATCCCTGAAAGTCTCAACCTTGATTTTCTGAAGGTGGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4I1	Unconventional myosin-Va OS=Homo sapiens OX=9606 GN=MYO5A PE=1 SV=2
Q9ULV0	Unconventional myosin-Vb OS=Homo sapiens OX=9606 GN=MYO5B PE=1 SV=3
P21271	Unconventional myosin-Vb OS=Mus musculus OX=10090 GN=Myo5b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002677 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF01843 all species →	DIL	DIL domain	Repeat	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002710 all species →	Domain	Dilute domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR004009 all species →	Domain	Myosin, N-terminal, SH3-like	Interproscan
IPR036103 all species →	Domain	Class V myosin, motor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10357	MYO5; myosin V	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.