Gene detail

Detailed information of g1718.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002167428.1, protein FAM151B-like isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6UXP7	Protein FAM151B OS=Homo sapiens OX=9606 GN=FAM151B PE=1 SV=2
D3YUE4	Protein FAM151B OS=Mus musculus OX=10090 GN=Fam151b PE=1 SV=1
Q8WW52	Protein FAM151A OS=Homo sapiens OX=9606 GN=FAM151A PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15967	Nucleoporin_FG2	Nucleoporin FG repeated region	Family	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF00166	Cpn10	Chaperonin 10 Kd subunit	Domain	Interproscan
PF08064	UME	UME (NUC010) domain	Domain	Interproscan
PF10223	Menorin	Menorin	Family	Interproscan
PF02955	GSH-S_ATP	Prokaryotic glutathione synthetase, ATP-grasp domain	Domain	Interproscan
PF02951	GSH-S_N	Prokaryotic glutathione synthetase, N-terminal domain	Domain	Interproscan
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024882	Family	Nucleoporin p58/p45/NUP49	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan
IPR020818	Family	GroES chaperonin family	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037124	Homologous_superfamily	GroES chaperonin superfamily	Interproscan
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR011032	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan
IPR012993	Domain	UME domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050517	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR019356	Family	Menorin	Interproscan
IPR004218	Domain	Prokaryotic glutathione synthetase, ATP-binding	Interproscan
IPR006284	Family	Glutathione synthetase, prokaryotic	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR004215	Domain	Prokaryotic glutathione synthetase, N-terminal	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR051270	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13437	NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1	Interproscan
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan
PTHR11139	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan
PTHR21184	MENORIN (DENDRITIC BRANCHING PROTEIN)	Interproscan
PTHR21621	RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN	Interproscan
PTHR11586	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0044183	Molecular Function	protein folding chaperone	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0004363	Molecular Function	glutathione synthase activity	Interproscan
GO:0006750	Biological Process	glutathione biosynthetic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0016879	Molecular Function	ligase activity, forming carbon-nitrogen bonds	Interproscan
GO:0000049	Molecular Function	tRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03665	hflX; GTPase	-	Glutathione metabolism	ko00480	deepkoala
K03665	hflX; GTPase	-	Ribosome biogenesis	ko03009	deepkoala