Gene detail

Detailed information of g17187.t1 in Acropora digitifera

Genomic Location: chr8Alt:6579904...6592148
NR annotation: XP_029207338.2, polyunsaturated fatty acid 5-lipoxygenase-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g17187.t1

ATGGGTAATTCGTGCAGTGGTTTGGCTCCAGACTGTGAAATCCTGGTGAAAACTGGAGACGTTAAAGGCGCCGGTACCGATGCGAATGTTTACTGTGCGTTATTCAACGAAGATAAAACTCGATCGCGTGATCTCAACCTTGATTGCAAGTGGAAGAACGATTTCGAGAAGGGTTCCGTGGATCGCTTTAAAGTTCATTGTGGTCTTCCGGCTGGTCCTTTGCACAAGATAGAAATTTGGAGAGATGACAGTGGAATCGGCGACGACTGGTACGTGGAGTGGATAAAAGTAAAGAAATTCCAAGAACCAGACCAAGAGGATGAAGAAGGTGTCATCTTTCCCTGCAATCGCTGGGTAAAAGCCGAGCGAAAGCTAATTCTGACGAAGTACGACTGTGTTTTGCCGCAATTTGACGAACACCCGGAGCAGAGAAAGGAAGAGTTGGAAGACAAAAGGGGCGTTTATAGACTTTCGCGGAAAGCCCCAGGCATCCCAAAACAGGTCGAGAGTTGCCCAAGAGACGAGCATTTTAGTAACGACTACAAGTGGAATATCCAACAAACAAAGTACACCCTTGCTGTGAAGTGTAAGTTGGCAAAACTGACGTCCGATCCCTGGGAAACATTGGATGATTTTGGAAATCTCTACAAAGGAAGCCTCAACAAACCCTATGGTTACTTCAATTGGAAAGAGGACACAAATTTTGGGCGCCAGAGACTGCAAGGTTGCAACCCTACTCTTATCACACTTTGCACAGAAATCCCTCAAAACTTTAAGGTGACCCCAGAAATGGTCAAACCTTTCCTTGATGGACTGACACTTGAAGAAGCAATGGAAAAAAAGAAAATTTACATTGTAAACTTGAAGAGACTCTCTGATGTGATGTGCAGGTTCAATAGAGTGATCTGCAAGCCAATGGCCTTATTTTTTTCCAATGAAAGAAATGAACTTGTTCCTATTGCAATCCAGTTGTTCCAGAAATCAGCTGATGACAATCCGGTGTTTTTACCAAGTGATCCCAAGTATACGTGGATGATGGCAAAAATGTATTACAACAACGCTGATGCGGCATTTCATCAATCTTGTACTCATCTTGGCTTCACTCATCTGGTTGCAGAAACCATTTGCGTGGGAACTCATCGCCAGCTTTCACCATCTCACCCTGTCTTCAGACTGCTGGCTCCCCATTTCTTGTACCTACTGGCCATCAACTCCCTTGCTCTGGCAAAACTGGTTGCACCAAATGGCTGGATTGATAACACCATGACAACAGGAGCTGGTGGCTTGATGGAACTTGTCAGTCATAGCTGGCAAATTTGGAGAATGGATACAGATGGTTGGTTGCCAGGCGATCTGGCTGCAAGAGGGGTTGATGACACAGAAGCATTACCAAATTACCCTTACAGAGATGATGCACTGTTGATTTTTGAAGTTATCCATGACTATGTGCGAGAGGTTCTTGAGGCTTTTTATGATACTCCAGAAAAACTGACAGGTGATTGGGAGATTCAAAATTGGGGGCACATGTTGGCCGATCCGGAAGATGGCTTGGGAATAAAGGGAGTATTTGGAGGCGGCGAGTTTACCGATTTGGAAGACCTGATCAAAGTTGTGACGTCTATCATCTTCATAAGCAGCGTGGGACATTCGGCTGCTAATTTTGCTCAGTATGACGAGTATGCCTTCCCGCCAAACTATCCAGCATTTTTACGCGGAAAACCTCCAACCTCAAAGGAGCCTCTGACAGAGCAAGAGATCATAAATGCGCTTCCAGTGAAAGACATGACCCTGGACATCATAATCGTGACCAAAATCCTCAGCGATCGCGGCACCAATGCACTTGGCGACTTTGAAGTGCAGTACATGTACGATCCAAGAGGAACAAAACCGTGTGAAAAGTTAAGAAAACGCTTGTTGGAAGTCAGCGACCAAATTGCAGAGAGAAACAAAAGTCGACCATTTCCCTATCCCTACCTGGATCCCAAAGAAGTTCCTAATGCTATCAGTATTTGA

Transcript

chr8Alt.g17187.t1

GTTGTATATTTGGTGTCTATTTCATTGGGAACTTTAAGAAAACATGGGTAATTCGTGCAGTGGTTTGGCTCCAGACTGTGAAATCCTGGTGAAAACTGGAGACGTTAAAGGCGCCGGTACCGATGCGAATGTTTACTGTGCGTTATTCAACGAAGATAAAACTCGATCGCGTGATCTCAACCTTGATTGCAAGTGGAAGAACGATTTCGAGAAGGGTTCCGTGGATCGCTTTAAAGTTCATTGTGGTCTTCCGGCTGGTCCTTTGCACAAGATAGAAATTTGGAGAGATGACAGTGGAATCGGCGACGACTGGTACGTGGAGTGGATAAAAGTAAAGAAATTCCAAGAACCAGACCAAGAGGATGAAGAAGGTGTCATCTTTCCCTGCAATCGCTGGGTAAAAGCCGAGCGAAAGCTAATTCTGACGAAGTACGACTGTGTTTTGCCGCAATTTGACGAACACCCGGAGCAGAGAAAGGAAGAGTTGGAAGACAAAAGGGGCGTTTATAGACTTTCGCGGAAAGCCCCAGGCATCCCAAAACAGGTCGAGAGTTGCCCAAGAGACGAGCATTTTAGTAACGACTACAAGTGGAATATCCAACAAACAAAGTACACCCTTGCTGTGAAGTGTAAGTTGGCAAAACTGACGTCCGATCCCTGGGAAACATTGGATGATTTTGGAAATCTCTACAAAGGAAGCCTCAACAAACCCTATGGTTACTTCAATTGGAAAGAGGACACAAATTTTGGGCGCCAGAGACTGCAAGGTTGCAACCCTACTCTTATCACACTTTGCACAGAAATCCCTCAAAACTTTAAGGTGACCCCAGAAATGGTCAAACCTTTCCTTGATGGACTGACACTTGAAGAAGCAATGGAAAAAAAGAAAATTTACATTGTAAACTTGAAGAGACTCTCTGATGTGATGTGCAGGTTCAATAGAGTGATCTGCAAGCCAATGGCCTTATTTTTTTCCAATGAAAGAAATGAACTTGTTCCTATTGCAATCCAGTTGTTCCAGAAATCAGCTGATGACAATCCGGTGTTTTTACCAAGTGATCCCAAGTATACGTGGATGATGGCAAAAATGTATTACAACAACGCTGATGCGGCATTTCATCAATCTTGTACTCATCTTGGCTTCACTCATCTGGTTGCAGAAACCATTTGCGTGGGAACTCATCGCCAGCTTTCACCATCTCACCCTGTCTTCAGACTGCTGGCTCCCCATTTCTTGTACCTACTGGCCATCAACTCCCTTGCTCTGGCAAAACTGGTTGCACCAAATGGCTGGATTGATAACACCATGACAACAGGAGCTGGTGGCTTGATGGAACTTGTCAGTCATAGCTGGCAAATTTGGAGAATGGATACAGATGGTTGGTTGCCAGGCGATCTGGCTGCAAGAGGGGTTGATGACACAGAAGCATTACCAAATTACCCTTACAGAGATGATGCACTGTTGATTTTTGAAGTTATCCATGACTATGTGCGAGAGGTTCTTGAGGCTTTTTATGATACTCCAGAAAAACTGACAGGTGATTGGGAGATTCAAAATTGGGGGCACATGTTGGCCGATCCGGAAGATGGCTTGGGAATAAAGGGAGTATTTGGAGGCGGCGAGTTTACCGATTTGGAAGACCTGATCAAAGTTGTGACGTCTATCATCTTCATAAGCAGCGTGGGACATTCGGCTGCTAATTTTGCTCAGTATGACGAGTATGCCTTCCCGCCAAACTATCCAGCATTTTTACGCGGAAAACCTCCAACCTCAAAGGAGCCTCTGACAGAGCAAGAGATCATAAATGCGCTTCCAGTGAAAGACATGACCCTGGACATCATAATCGTGACCAAAATCCTCAGCGATCGCGGCACCAATGCACTTGGCGACTTTGAAGTGCAGTACATGTACGATCCAAGAGGAACAAAACCGTGTGAAAAGTTAAGAAAACGCTTGTTGGAAGTCAGCGACCAAATTGCAGAGAGAAACAAAAGTCGACCATTTCCCTATCCCTACCTGGATCCCAAAGAAGTTCCTAATGCTATCAGTATTTGAATTAAGTTCCTCACGAGGAACAGAATTGACTAACGGATTCCAATCTCGGGAGACATAGTTGACTGTTGTTGTTTTCAACTTGCCATACTAGCGTGGTAATTAATAATAATTAGGCGAGTATCCATTGAATAGCATCATTATGCGTTAACAGCGATACTTAATATCTCACTTGCATTTAAAGTTCTTTTTCGGCATTTTTACGAATAACGTTTATCCTTTCAGTGGTAGGTGATCTGGTGATTCAGCCGTCTTTAATTGATTGTCACAAGTAAGAAAACCGATTACAATTTGCTAGTACAAGTTTTCCCCGTTAGTCGTGAAGTGGGTTTTATACCCTAGGCATACACCATCCTAGACCTTAAGTTTTGCGATTGCTAGAACCTTTTAGTCACTGTAATTTATCAGATTGAAGTCAACTTTGCATTGTAACTGCAAACTGAACGAGAGGATGTCAGTCCATTCTCTATCCATTTCCTTCGCCCATGTAGGAGACTGAGCGCAAAACATGAATTAGTTTGGTTAGGAATGAATAGGTAATTTTTGTCACGTTTTGCAATTGAGTAAAAAGTTAATGCGCAATTGTGTCATATTTATTGTGCGCAGTGAATAACAGCATTTATACTATATGACCTTGCTGTAGAATACGCCGGTTACTCGGCAGGCGAAGTCCAATGTTTCTTTAACGCGAAATTAGCTCCCATCCATTGTATTTCTAAGCTCGTGAAGAATAAATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51399	Polyunsaturated fatty acid 5-lipoxygenase OS=Mesocricetus auratus OX=10036 GN=ALOX5 PE=2 SV=2
P48999	Polyunsaturated fatty acid 5-lipoxygenase OS=Mus musculus OX=10090 GN=Alox5 PE=1 SV=3
P09917	Polyunsaturated fatty acid 5-lipoxygenase OS=Homo sapiens OX=9606 GN=ALOX5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020834 all species →	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00461	ALOX5; arachidonate 5-lipoxygenase	EC:1.13.11.34	Toxoplasmosis	ko05145	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.