Gene detail

Detailed information of g17209.t1 in Montipora capitata

Genomic Location: Sc0000761:110292...119009
NR annotation: XP_044181395.1, vitamin K-dependent gamma-carboxylase-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g17209.t1

atgagcacggaagctaaaaaagagcagtgtgatgagaagcagttgtcgatggctcatttaacatattggaacagatttacactcttcatgacatcaccaactgatccttcaaatctggctgtgttgaggattttatttggatttttaatgattcttgacattccccaagaacgtagcatgttattcatcgctcaccagtttggctcagactcctgccacttcccactgtttagcttcattcagcctctgtctgttgactggatgcatgttgtgtatcttgtaatgtttctgggtgcttgtggaatttgccttggatttatgtttcgtctaagttgcttgtcattcatggtaacttattggtacatttttcttttggaaaaatgccgatggaataatcactcctatttgtatggattgatgtcagtcatgctgatcctgagtgatgctaaccattactggtccttggatggatacttaaatccagaattgagaaattctcatgtaccaaagtggaactacgttctgttgcgcttccaggtgtttcttgtgtatttctatgctggtttgaaaaaacttgatctggactggatgagaggttattccatgactgggctttcacgtcaatgggtttttgatccatttcgtatatttcttgatgatcaaataatcgacttgtttcttgttcatattggtggattactgtttgatctctcagaaggtttccttctcgtttttgaaaagacacgccccatcggaatatttttaggtgctatgttccatggtatgaattctcagatgtttcacattggcatgtttccgtacacaatgttggccacgttgcctttattttgtgcttacaactggcctaagaaacttttttcgtaccttccaaacaccttggcaaagatcttaccatcacaggatgttcctcaaactagtcctcattgcatttatccgagcagtaacaaggctgatgacagattacaagataaaaagggcgcatcgttgacaattcagatgccctcgacgaaacacaaggcgctcgtgtgcattgtacttgtttatatgggagtacagattttccttccatattcacattttgttacaaagggatataatgcatggactcaaggtctttatggctactcgtgggacatgatggtccattcatggagtactcagcatgtcaggatcaaagtagttgaccagatttctggagaagttacgtatctaaggcccacggcttggatgaaagaaaagcgtcaatcacgctggaattcacatccagatatgattaaacagtacgttgcttgtattgcggaaaagctcaagactttcgatgaactcaacatcaccgagcctgcgatatacctggatgtttggcgatcgatgaacagacgctttcaacagcgcatggtagatcctaatgtcgatataatcaaggccccatggtcgccatgggaacagacagtttggatacagcctttgcttacagagttgtcaccgtggcgggaaaagttgattcagattagaaatgaattaagagaaaagtccaacttcagtgaaataacgtttgtggccgattttcctggtcttttcttggaaaattttgttgctgtagacttgaacacgtcgttgactttattacgcggacaagttaaggtggagttcgataacacaaatcacactgtgcaagttggagaagaaataatactgccatcaaacgacactcacgtggtgtacacggtatctgaaagtccttcatgctggatgtacattttcatgaacacaacagaatggaataacgaaacaattagaaactggatacttcatccggaaaccgccccgcagaggaaagtatcatggaagaaaaacacaacgcgcttggaaaagtttaaagtatttctcaccgataagtatctagtgtttcgacagagttttgttaacacttactatgcactggcccatttgacactcggaatcgaaatgtattatgacgaagaggaggatacggatttttcggagtcgcagactggagacgactctgataccggggacgacatgggtcgcgcgaatgatgagccaggaaaagaacgtgataaacaggagttgtaa

Transcript

g17209.t1

ATGAGCACGGAAGCTAAAAAAGAGCAGTGTGATGAGAAGCAGTTGTCGATGGCTCATTTAACATATTGGAACAGATTTACACTCTTCATGACATCACCAACTGATCCTTCAAATCTGGCTGTGTTGAGGATTTTATTTGGATTTTTAATGATTCTTGACATTCCCCAAGAACGTAGCATGTTATTCATCGCTCACCAGTTTGGCTCAGACTCCTGCCACTTCCCACTGTTTAGCTTCATTCAGCCTCTGTCTGTTGACTGGATGCATGTTGTGTATCTTGTAATGTTTCTGGGTGCTTGTGGAATTTGCCTTGGATTTATGTTTCGTCTAAGTTGCTTGTCATTCATGGTAACTTATTGGTACATTTTTCTTTTGGAAAAATGCCGATGGAATAATCACTCCTATTTGTATGGATTGATGTCAGTCATGCTGATCCTGAGTGATGCTAACCATTACTGGTCCTTGGATGGATACTTAAATCCAGAATTGAGAAATTCTCATGTACCAAAGTGGAACTACGTTCTGTTGCGCTTCCAGGTGTTTCTTGTGTATTTCTATGCTGGTTTGAAAAAACTTGATCTGGACTGGATGAGAGGTTATTCCATGACTGGGCTTTCACGTCAATGGGTTTTTGATCCATTTCGTATATTTCTTGATGATCAAATAATCGACTTGTTTCTTGTTCATATTGGTGGATTACTGTTTGATCTCTCAGAAGGTTTCCTTCTCGTTTTTGAAAAGACACGCCCCATCGGAATATTTTTAGGTGCTATGTTCCATGGTATGAATTCTCAGATGTTTCACATTGGCATGTTTCCGTACACAATGTTGGCCACGTTGCCTTTATTTTGTGCTTACAACTGGCCTAAGAAACTTTTTTCGTACCTTCCAAACACCTTGGCAAAGATCTTACCATCACAGGATGTTCCTCAAACTAGTCCTCATTGCATTTATCCGAGCAGTAACAAGGCTGATGACAGATTACAAGATAAAAAGGGCGCATCGTTGACAATTCAGATGCCCTCGACGAAACACAAGGCGCTCGTGTGCATTGTACTTGTTTATATGGGAGTACAGATTTTCCTTCCATATTCACATTTTGTTACAAAGGGATATAATGCATGGACTCAAGGTCTTTATGGCTACTCGTGGGACATGATGGTCCATTCATGGAGTACTCAGCATGTCAGGATCAAAGTAGTTGACCAGATTTCTGGAGAAGTTACGTATCTAAGGCCCACGGCTTGGATGAAAGAAAAGCGTCAATCACGCTGGAATTCACATCCAGATATGATTAAACAGTACGTTGCTTGTATTGCGGAAAAGCTCAAGACTTTCGATGAACTCAACATCACCGAGCCTGCGATATACCTGGATGTTTGGCGATCGATGAACAGACGCTTTCAACAGCGCATGGTAGATCCTAATGTCGATATAATCAAGGCCCCATGGTCGCCATGGGAACAGACAGTTTGGATACAGCCTTTGCTTACAGAGTTGTCACCGTGGCGGGAAAAGTTGATTCAGATTAGAAATGAATTAAGAGAAAAGTCCAACTTCAGTGAAATAACGTTTGTGGCCGATTTTCCTGGTCTTTTCTTGGaaaattttgttgctgtagACTTGAACACGTCGTTGACTTTATTACGCGGACAAGTTAAGGTGGAGTTCGATAACACAAATCACACTGTGCAAGTTGGAGAAGAAATAATACTGCCATCAAACGACACTCACGTGGTGTACACGGTATCTGAAAGTCCTTCATGCTGGATGTACATTTTCATGAACACAACAGAATGGAATAACGAAACAATTAGAAACTGGATACTTCATCCGGAAACCGCCCCGCAGAGGAAAGTATCATGGAAGAAAAACACAACGCGCTTGGAAAAGTTTAAAGTATTTCTCACCGATAAGTATCTAGTGTTTCGACAGAGTTTTGTTAACACTTACTATGCACTGGCCCATTTGACACTCGGAATCGAAATGTATTATGACGAAGAGGAGGATACGGATTTTTCGGAGTCGCAGACTGGAGACGACTCTGATACCGGGGACGACATGGGTCGCGCGAATGATGAGCCAGGAAAAGAACGTGATAAACAGGAGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RF50	Vitamin K-dependent gamma-carboxylase OS=Pongo abelii OX=9601 GN=GGCX PE=2 SV=1
P38435	Vitamin K-dependent gamma-carboxylase OS=Homo sapiens OX=9606 GN=GGCX PE=1 SV=2
Q9QYC7	Vitamin K-dependent gamma-carboxylase OS=Mus musculus OX=10090 GN=Ggcx PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003929 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05090 all species →	VKG_Carbox	Vitamin K-dependent gamma-carboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007782 all species →	Family	Vitamin K-dependent gamma-carboxylase	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR011020 all species →	Domain	HTTM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12639 all species →	VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008488 all species →	Molecular Function	gamma-glutamyl carboxylase activity	Interproscan
GO:0017187 all species →	Biological Process	peptidyl-glutamic acid carboxylation	Interproscan
GO:0019842 all species →	Molecular Function	vitamin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10106	GGCX; vitamin K-dependent gamma-carboxylase	EC:4.1.1.90	Ubiquinone and other terpenoid-quinone biosynthesis	ko00130	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g17209.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

34.8Max TPM

13.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	15.48	34.77
whole organisms · low pH treatment	15	15	11.08	32.06
whole organisms · extra low pH treatment pH treatment	12	12	13.84	32.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	34.77
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	33.65
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	32.10
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	30.15
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	27.80
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	18.27
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	18.05
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	16.67
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	15.67
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.40
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	13.23
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	12.59
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.07
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	9.01
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	7.94
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	7.56
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	6.69
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.12
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.34
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	4.21
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	3.80
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	32.06
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	28.17
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	26.61
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	14.61
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	8.65
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	7.80
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	7.01
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	6.43
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.40
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	6.37
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	5.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	5.71
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	4.81
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	2.89
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	2.86
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	32.61
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	30.93
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	29.71
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.93
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.83
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	10.92
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.28
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	7.60
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	6.21
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	4.31
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	4.16
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	3.60

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.