Gene detail

Detailed information of g17316.t1 in Acropora digitifera

Genomic Location: chr8Alt:8093945...8117521
NR annotation: XP_029194910.2, uncharacterized protein LOC114960660 isoform X3 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g17316.t1

ATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGCATACGTACCACAGCCAAAGGATCTGTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCGAAGGACAAGTTTATTGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTTGATAAAGATGGAAATGGTCGTATAGATCGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGATGCGTATGAAAAACAAACATTTGCACATTTTGCATGCATCAAATCTATGTGTGCAAATTTGTTCACTTAAATTATCTTCAAGCAGCAATGTACGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATTCAAGCTAGAGAAAACCATCCTCACTATGAGAGTGACTACAGGACATCGGCTGATATAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTTTCTCAATTCAATGATACTACAAATGGCAAATTATCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTCATACTGGACTCGGTGTTTCAGCACTGTAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATTCTCATATGCCACCGTCGACGGTTGCATCTTCACATCAGGGAACGAGATGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGATGTGTTCAGCGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGCCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAAGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCATTGTGGACTTTCAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTCTGGCAATATGAGCTTGACACCTCAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTGTTGGTGCTGGTGGTATGTGGGTGTATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCGGGGCTGTTTGGACATTCTGCGATTAAGATTGGAGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAACACCATGTGGCGCTTTGATTTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGCATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCGTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCAATGTTACCCAATGCAGTGGCGAAATTTGCTTTCAATAAACCTGATAAGAATCGCCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACATTATCGGATGATGCCTTACACGAACCACACGATAGCAAGGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTCGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTATGTGCACGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTACTTGGAGGCAAGACACGTAACCACACCGAGATGGGAAGAACACTTGACTTTTGGCGATGTGACATCGACCCAGTGGAGAAGTCCACACAGGGAATGGAAAAAATAATCGCTGTCAAAAAGAACTCAGCAGAAAAATCCAGCAATCTTCCCCATATATACTTGAATCATTCTTCGTGTTCCGCTGACCTGGATGACCACGGGACTCAAGTAGTTGGAGGTGACCTGGAATTGGCCGATATGTCGGATAGTGATACTCGGAGTGTCGACCTTTTAATAGACGACATCGACGGTTACGAGAGGACTTCACGAAGCTTTCCGAAAGTTTCCATATAA

Transcript

chr8Alt.g17316.t1

ACGGTCATCATTATTGACATACGAGAGCGATAAATTAATTAAGGGCTATATGACTCTGCTGTAAACGGCATGACATTTTCAAAGCTATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGCATACGTACCACAGCCAAAGGATCTGTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCGAAGGACAAGTTTATTGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTTGATAAAGATGGAAATGGTCGTATAGATCGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGATGCGTATGAAAAACAAACATTTGCACATTTTGCATGCATCAAATCTATGTGTGCAAATTTGTTCACTTAAATTATCTTCAAGCAGCAATGTACGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATTCAAGCTAGAGAAAACCATCCTCACTATGAGAGTGACTACAGGACATCGGCTGATATAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTTTCTCAATTCAATGATACTACAAATGGCAAATTATCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTCATACTGGACTCGGTGTTTCAGCACTGTAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATTCTCATATGCCACCGTCGACGGTTGCATCTTCACATCAGGGAACGAGATGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGATGTGTTCAGCGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGCCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAAGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCATTGTGGACTTTCAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTCTGGCAATATGAGCTTGACACCTCAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTGTTGGTGCTGGTGGTATGTGGGTGTATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCGGGGCTGTTTGGACATTCTGCGATTAAGATTGGAGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAACACCATGTGGCGCTTTGATTTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGCATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCGTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCAATGTTACCCAATGCAGTGGCGAAATTTGCTTTCAATAAACCTGATAAGAATCGCCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACATTATCGGATGATGCCTTACACGAACCACACGATAGCAAGGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTCGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTATGTGCACGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTACTTGGAGGCAAGACACGTAACCACACCGAGATGGGAAGAACACTTGACTTTTGGCGATGTGACATCGACCCAGTGGAGAAGTCCACACAGGGAATGGAAAAAATAATCGCTGTCAAAAAGAACTCAGCAGAAAAATCCAGCAATCTTCCCCATATATACTTGAATCATTCTTCGTGTTCCGCTGACCTGGATGACCACGGGACTCAAGTAGTTGGAGGTGACCTGGAATTGGCCGATATGTCGGATAGTGATACTCGGAGTGTCGACCTTTTAATAGACGACATCGACGGTTACGAGAGGACTTCACGAAGCTTTCCGAAAGTTTCCATATAAAAATATCAACTAAAAATGTAACTTTTTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00036 all species →	EF-hand_1	EF hand	Domain	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13964 all species →	Kelch_6	Kelch motif	Repeat	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g17316.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.