Detailed information of g17340.t1 in Montipora capitata

Genomic Location: Sc0000775:13065...23691
NR annotation: KAJ7384929.1, Ribosome biogenesis protein 1 [Desmophyllum pertusum]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0JMQ0Ribosome biogenesis protein bop1 OS=Danio rerio OX=7955 GN=bop1 PE=2 SV=1
P97452Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1
Q562C2Ribosome biogenesis protein BOP1 OS=Rattus norvegicus OX=10116 GN=Bop1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005052 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF08145
all species →		BOP1NTBOP1NT (NUC169) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR028598
all species →		FamilyWD repeat BOP1/Erb1Interproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR012953
all species →		DomainBOP1, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17605
all species →		RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000463
all species →		Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042254
all species →		Biological Processribosome biogenesisInterproscan
GO:0043021
all species →		Molecular Functionribonucleoprotein complex bindingInterproscan
GO:0070545
all species →		Cellular ComponentPeBoW complexInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g17340.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP