Gene detail

Detailed information of g1735.t1 in Tripedalia maipoensis

Genomic Location: scaffold_10:18337816...18376066
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1735.t1

ATGCCCAAAATGCGAGGAAATGCACTGCGACTATGTCTTAGATGGTGGTGTGTCCACTTGCGGGCTAAAGGGACAAGGAGGCTCTGGAGCCGAAGTAGCCAGCTTGGTCTTTCAAGCCCAGAACGAATAAATGGTATCCGAATCCAAATGCTATCGGAAAATTTACATAGACAAATTTTCCCAACCAATGCAACATCATCTTCTGACTGCGCAGAGAATCCAGAAAATTTACAGAAGGTGAGCAAACATCTTGCTGAACATGGGCTGCTTGACAAGGAGACTTCTTCAGTGGCTGATATAGAACTCTCATTGCCAAGACTGAGGGGGAACAATATCGATGAGCATTTCAAGGCGATAGCCACGGAACAAAGCCGAGCATATTTTGATTTAGCCGTTCAGCTAGCCGGCTGCAAACTGCCTCCGATGCCAGAGAAGTGGGAGAAGTGGAGTGGCTGGACACGATATTGTGCCGATGGAACAAGAGAACGGGTAAATGCACCTTTAGAAAACGGGCTTGTATTTGATGTGGAAGTATGCGTACGTGATGGGAACTATCCAATTCTTGCTACTGCGGCGTCTGACTCTGCTTGGTACTGTTGGGTGCACCCTGTTCTAGATGAACGGAATACTGTTGATTACAACAAGAACATTCTAACATCTGATGAATGCATACCTCTTGATTTGCACACTAAGGAGGAAAGATTGATTATTGGGCATTATGTTTGCTATGATCGCTCATATGTAAAGGAACAGTATGATCTTCAGATGCCAAGCACCAAGTTTTTGGATACAATGAGCCTTCATATGTGTGTTTCTGGCCTTAGTAGTTCCCAGAGAGCCAAACTTCAGAGTGCAAAAAAAACTGGAGTAAAAAGAGATTCTTGGATGGCAATAGGTTCTCTGAACAACTTATCTGATGTCTATGCATTGTACACAGGAAACAAAAAACTTGACAAAAGTATGAGGGATATTTTTGTGGACGGAACAGTAGAGGAAATACAGCAACAGTTCCAGGAATCGGTGCAGTATTGTGCCAACGATGTACTTGCTACTCATGATGTCTTCACATACCTGTGGCCATTGTTTTTGGATACAGCTCCTCATCCAGTTACCTTTGCTGGTATGTTGGAAATGGCAACCGCCTATCTTCCCGTCAATGATAGCTGGCCTAAGTATATCAGAGACGCCAATGAAACTTTTGCCAATATTGAGGACGAAATGAGAGGCATTTTGATGAAATTAGCTACTCAGGCTTGTGAATTGACAACAGATCAAAAATACGTGACAGACCCATGGTTATGGAGCTTGGACTGGTCAACGCAAGAGCTCAGAGTGAAAAAAACTATCAAAGCCAAAAAGAAAAACAAAGCGGAGGAAGAAGCCATCAAAGATACAGTGAAAAAACTTGAGTCTTGTTCCCTTGAAGAAGCAAGTCTACTGGACATTACAGATTGGTACCCAGACCTTCCTACTCCAGACTCAGTGTTTCATAAAAAACGTCAACATATGGTTGGCTTTCCAAGTTGGTACCGAAAGTTTTGCCGAAGGTACAGTGATCCTGAATGGGAAGCTGGTCCAATTTTAATTAGTGCTCAAGCGCGCATTGCACCCTTGTTGCTGAAAATGACTTGGGATGGGTACCCACTGTTCTTCAATGAGCGACATGGCTGGGGATACCTTGTACCAGGAAGGAAAGACAACCTTACCACGGAAATAAAACTGCCAAAAATAAGAAACCGAAAGCTTAAGTCAACTGGTGATGTCGGAGAGTTAACCGTTGAAAGTTTGCATGAATATGCAAATAATGCCTCTTTCCCAGTCAGTGCGTTTTATCAGTTTGGGAACGGACATCTCAAAAATCATAGCGCCACAATAGAGCCAGAGATGTCTCATGGTCGTCTTCTTACAGACAATTGGCTGGAGGAAATAGAGGAGGTCGAAGCTGTTAACAATCAACACGAAGGTTTAGGACCTTTTAATGACATTAACCTCCCAGGAGTATGGTTTTACAAAATACCGCACAAGGATGGCGAGGAAAATAATTGTGGAAACCCTCTTGGGAAGGACTACCTTAGCAAAATGGAGGAAGGGTCCTTGGTTTCTTTAGCAGGAGCCAGTGGTAGGAAAACTCTGGAGCTGAATAAGATGATATCCTTCTGGCGTAACGCGAGCAAGCGAATCTGCTCGCAAATGACTGTGTGGCACAGAAAAGCCAGCACCGTCCTAAGTGAAGGAGAGAAGAGAAGCACGTTTGGCGTCATTCTACCACGTATGAAAGTTGCTGGAACCGTTACTCGTAGAGCTGTAGAAGAAACGTGGCTTACAGCAAGTAATCCACGGCATGACCGTGTGGGATCTGAGCTGAAATCACTGATTAGGGCTCCCCCTGGCTATGTTTTTGTTGGAGCAGACGTCGACAGTCAAGAACTTTGGATAGCGGCCATTTTGGGTGACGCTCATTTTGCTGGAGTTCATGGTGGTACTGCTTTCGGTTGGATGAACCTGCAAGGTAAAAAGAGCGAAGGAACAGACTTACATAGTAAGACAGCTAACACGATTGGCATCAGTAGAGATCATGCCAAGATCTTTAACTACGGGCGTATTTATGGAGCAGGCAAGAACTTTGCGAAGAGTCTTCTCCTTCAATTTAACCATCGAATGTCGGAGAAAGAGGCAGAAGAGAAAGCTGAGCAGTTATACAGGAGCACTAAAGGAAGTGTAAGGTTCCGTCTTACAACGCAAAGTGTCCAAGCAGCGGAAAAGTATGGCTTAGCTGTCGACAATGATGGATGTGTCAGTCAACATGACTTTTACACGCTTGTTCATAAGAAGCGAGTTAAAAGATCTGATCTTGGATTGCTTGGTGAGAGAATCTGGAAGGGTGGTAGTGAATCAGAAATGTTCAACAAACTCGAAAAAATAGCCACCTCAGGAGACCCCAAGACTCCCGTGCTGAACTGTAGAATTAGCCGAGCGTTACGGCCAGATGTCGTGGGGAACCAGTTTATGACCAGTAGAATTAATTGGGTTGTTCAGTCCTCGGCAGTGGATTACCTCCACCTGATGCTTGTTTGTATGAAGTGGCTGTTCACCAAATACTCTATTAATGGACGATTTTCCATCAGCATCCATGATGAGGTGAGGTATTTAGTCGATGAAGAGGACAAGTACAGGGCATCCCTAGCTTTGCAAATAACCAATCTGCTCACGAGGTCAATGTTTGCATACAAGCTTGGTTTAAATGACCTTCCACAGTCCGTTGCCTTCTTTAGCGCTGTTGACATCGACAAGGTGGTTCGCAAGGAGGTTACTTTAGACTGCCGAACACCGTCAAACCCAGATGGCCTAGCTAAAGGGCATGGTATCGCTGCAGGTGAAGCTTTGGATATTTATGAAGTTATTGCAAAAACTGATGGAGGTAGTTTGGCGAAAATAGACGCAGAGCATTGTCATAGGATGGGCATCAAACTCTCATGA

Transcript

g1735.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002983 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18136 all species →	DNApol_Exo	DNA mitochondrial polymerase exonuclease domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002297 all species →	Family	DNA-directed DNA-polymerase, family A, mitochondria	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019760 all species →	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041336 all species →	Domain	DNA mitochondrial polymerase, exonuclease domain	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10267 all species →	DNA POLYMERASE SUBUNIT GAMMA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005760 all species →	Cellular Component	gamma DNA polymerase complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02332	POLG; DNA polymerase gamma 1	EC:2.7.7.7	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.