Detailed information of g176.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020613797.1, pre-mRNA-processing-splicing factor 8-like, partial [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
Q9SSD2Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana OX=3702 GN=PRP8A PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15882DUF4735Domain of unknown function (DUF4735)FamilyInterproscan
PF02995DUF229Protein of unknown function (DUF229)FamilyInterproscan
PF08084PROCTPROCT (NUC072) domainDomainInterproscan
PF11894Nup192Nuclear pore complex scaffold, nucleoporins 186/192/205RepeatInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031751FamilyProtein of unknown function DUF4735Interproscan
IPR004245FamilyProtein of unknown function DUF229Interproscan
IPR017850Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR012984DomainPROCT domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR021827FamilyNucleoporin Nup186/Nup192/Nup205Interproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR000998DomainMAM domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33539UPF0764 PROTEIN C16ORF89Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10974UNCHARACTERIZEDInterproscan
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan
PTHR14187ALPHA KINASE/ELONGATION FACTOR 2 KINASEInterproscan
PTHR31344NUCLEAR PORE COMPLEX PROTEIN NUP205Interproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006999Biological Processnuclear pore organizationInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0044611Cellular Componentnuclear pore inner ringInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

TOP