Detailed information of g177.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047141525.1, pre-mRNA-processing-splicing factor 8 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
P34369Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|GAT
Ubiquitin FamilyUBD|Other|Jab_MPN
Ubiquitin FamilyUBD|Alpha-Helix|VHS

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21771DUF6871Domain of unknown function (DUF6871)DomainInterproscan
PF00109ketoacyl-syntBeta-ketoacyl synthase, N-terminal domainDomainInterproscan
PF02801Ketoacyl-synt_CBeta-ketoacyl synthase, C-terminal domainDomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF18308GGA_N-GATN-terminal extension of GAT domainFamilyInterproscan
PF00790VHSVHS domainRepeatInterproscan
PF00397WWWW domainDomainInterproscan
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan
PF10597U5_2-snRNA_bdgU5-snRNA binding site 2 of PrP8DomainInterproscan
PF12134PRP8_domainIVPRP8 domain IV coreDomainInterproscan
PF10598RRM_4RNA recognition motif of the spliceosomal PrP8DomainInterproscan
PF10596U6-snRNA_bdgU6-snRNA interacting domain of PrP8DomainInterproscan
PF08083PROCNPROCN (NUC071) domainDomainInterproscan
PF08082PRO8NTPRO8NT (NUC069), PrP8 N-terminal domainDomainInterproscan
PF01834XRCC1_NXRCC1 N terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049270DomainCilia- and flagella-associated protein 58, central coiled coilInterproscan
IPR020841DomainPolyketide synthase, beta-ketoacyl synthase domainInterproscan
IPR014030DomainBeta-ketoacyl synthase, N-terminalInterproscan
IPR017568Family3-oxoacyl-[acyl-carrier-protein] synthase 2Interproscan
IPR016039Homologous_superfamilyThiolase-likeInterproscan
IPR000794FamilyBeta-ketoacyl synthaseInterproscan
IPR018201Active_siteBeta-ketoacyl synthase, active siteInterproscan
IPR014031DomainBeta-ketoacyl synthase, C-terminalInterproscan
IPR001589Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR041198DomainN-terminal extension of GAT domainInterproscan
IPR002014DomainVHS domainInterproscan
IPR008942Homologous_superfamilyENTH/VHSInterproscan
IPR004152DomainGAT domainInterproscan
IPR027422FamilyADP-ribosylation factor-binding protein GGA1-3Interproscan
IPR036020Homologous_superfamilyWW domain superfamilyInterproscan
IPR001202DomainWW domainInterproscan
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR019581DomainPre-mRNA-processing-splicing factor 8, U5-snRNA-bindingInterproscan
IPR042516Homologous_superfamilyPre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR021983DomainPRP8 domain IV coreInterproscan
IPR019582DomainRNA recognition motif, spliceosomal PrP8Interproscan
IPR019580DomainPre-mRNA-processing-splicing factor 8, U6-snRNA-bindingInterproscan
IPR012592DomainPROCN domainInterproscan
IPR012591DomainPRO8NT domainInterproscan
IPR043172Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR043173Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR002706DomainDNA-repair protein Xrcc1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32083CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATEDInterproscan
PTHR11712POLYKETIDE SYNTHASE-RELATEDInterproscan
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan
PTHR45905GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEINInterproscan
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan
PTHR11370DNA-REPAIR PROTEIN XRCC1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0006633Biological Processfatty acid biosynthetic processInterproscan
GO:0016747Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan
GO:0016746Molecular Functionacyltransferase activityInterproscan
GO:0004315Molecular Function3-oxoacyl-[acyl-carrier-protein] synthase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030054Cellular Componentcell junctionInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995Cellular Componentcell projectionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006893Biological ProcessGolgi to plasma membrane transportInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:0034394Biological Processprotein localization to cell surfaceInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006284Biological Processbase-excision repairInterproscan
GO:0000012Biological Processsingle strand break repairInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09458fabF, OXSM, CEM1; 3-oxoacyl-[acyl-carrier-protein] synthase IIEC:2.3.1.179
Spliceosomeko03041deepkoala
Lipid biosynthesis proteinsko01004deepkoala

TOP