Gene detail

Detailed information of g1770.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_047142461.1, protein Jade-1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

g1770.t1

ATGGGAATGAACGCTAAATCAAAAGATATTTTAACCGTAACTGCAAAGCCTCCTGAAGAACCGCTGATTGGCATGGATGTTGATGTTTTTccaaataaaaagaaaatgattGAGTCAACGGCAACGAATACTGGCCATGCAACTGCTGATTCTCTAACGTGTCTTATTGAAGGTAACGGAGATTCACAAGATCCTTCGACATCGTTCAGCAAACTGAAACAACCCGCTCATAAAAAGCATGCAGAGGTATTCAGAACAGATTTCATATCAGCAATGAAACTAGCTGACTCTCATATCCTTCAGCCTGAGGAATATGTTCCACTGAAAGACACATGGCGTCAGGAATGGGAAAAGGGGGTCCAGGTTCCTGTTAGCCCAGAAAAGATTTTGCAACCCTCTATCAGaAATAAACCTTTGTGTGATCCATCACCTTCAAAACgaagaaaattatttcattggCCAAAAGAAATGGTTACTTATGATGAGCCTAGAAAAATTGTACCACCGTCATCAAATCTTGAATGTGATTATAATTTGGACGAAGCTGATGTACTGTGGCTGAATGCTCTAAGTAGAGTATCACGTCTCAAGAAAGgtgaaattgatgaaatcaCAATGGAAAGAGCAATCACATATTTTGAACGACAGtGTTTTGAGAAAATGGCACACACTGTTGCGACAACAAAAGGACTCAGTATTGAATATGATGAATCAACCGCTTGCAACATTTGTCTTTCACCAGATACAGAAGAATTCAATGAGATTGTATTTTGCGATGCTTGCAATATGTGTGCCCACCAGtCGTGTTATGGTATTGTTGATATACCGGATGGTTCATGGCTTTGTCGTCCTTGTTCAAAGGGTATCGTTGCACCGCGTTGCATCTTATGTTCAGCAAAGGGTGGTGCATTAAAAAGAGTCAAGGATTCTTTCGATTGGATTCATGTGATCTGTGCCTGGTGGGTTCCTGAGGTGAAAATTGAAGATCTGGATAACATTGAAGAGATCAGTATTTCTAAAATTCCAGCCAGTCGTAAAGGTCTTATTTGTCATCTGTGTAGAGAGAAAACTGGAGCATGTGTTCAATGTTCAGTGAAACGATGCGTCAAGGCATACCATGTGACTTGTGCAGTAAAAGAAGGCCTGGAAATGAAAACTGTGATGCTACAAGAATCAGACGACGTCTCGCACATTtCTTACTGTTCTAAACACAGTGGTGGATCATCACCAAGCAAAGAAACAccgcaacaacaacaacaaccaacTGCAGCTGATGTACACAATTTACGCTTGGAAGAGTTACGGAAACTTGAAGGtgaattttttaaattggTTCTACTCAAAGATGCCTCCAAGGATTTACATCTATCAAAAGAAGCAACGCGACGCTTGTATTGTTATTGGTCATTGAAACGCAAAGCCAATGATAATTCACCACTCATTCCATTAACCATGGTGCAACAGGAAAAATTAAGTGGAAAACAGGGAATTGTCTTCTTGCGGGAACAGCTGAATCATGAAATTGAGAAATTCCTTTACCTTCGGCAAGACTTAGAAAGGTTACGAAATCTTTGCTACATGATAACAAAACGAGAGAAAGTCCGCCGTGAACTTCACAAAATGTCACAAGAAGTCTTCTACAAACAAAATGAGGCATTAACCCATGAACCATCTACGTCAGATGCTGATCGTAAATGGTTTAAAAAACCATCGATTTATGCAAAATTCGTTTCATTTCCACATTATGTAACAGAGAAAGAATGTGGCCTTGAAAATGGCGGGAAAACTACATTTGAGGAAGAAAAGAATACAGAAACTAAACTTAATCAGATTGAAAGCAGATTATCCGCTGAAGGTATTACGCAGTCGCCGACGGTTGAAGATTTACTAAGTAAAACGCCGACGCATATAGacgataaaataaaatgtgttaATAAATTACCATTATTTCCGGAACATCGGATTTCGGAGCCTGTGAAAAGTTCTGAATGCCTAAAATCAGCGAACAATAACGATCATTGTGTTGACGATAAGGACTTATTAAATACAAACGAAGATGGGCGTTTACCAGTGGCTACAAGCGAGGACAGTAAGAGAGTTTCGATGGAGCCTCTATCTGCTGTATCAGACGGTAGTGATCGAAGGAGACTAAGTACGAGACTAAAACGTTCGAATGATGAAACTTCTCTTAAATCAGAAATCTTGAAGGCAGAGTTTACTTGTAATCGTCTGACAACGCGGAACCACGTGTCGCCTGCTAGCAAGGAAAACCGAGATTACGTGATAGTAGCGTCGTCGTCATCACCGCAACGAATAACACGCTCTCGATTGGCTAGTTTAGATTCATTTGACGGCAATGGACATTCGCCATGCCGATTACGGCGGAGAGCTACTACGGTACGATAG

Transcript

g1770.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q92613	Protein Jade-3 OS=Homo sapiens OX=9606 GN=JADE3 PE=1 SV=1
Q6IE82	Protein Jade-3 OS=Mus musculus OX=10090 GN=Jade3 PE=1 SV=1
Q7ZVP1	Protein Jade-3 OS=Danio rerio OX=7955 GN=jade3 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF13831	PHD_2	PHD-finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR050701	Family	Histone Modification Regulator	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11347	JADE1, PHF17; protein Jade-1	-	Chromosome and associated proteins	ko03036	deepkoala