Gene detail

Detailed information of g1778.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCB9683492.1, RNA-binding protein [Alphaproteobacteria bacterium]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9DED4	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1
O93235	Cold-inducible RNA-binding protein A OS=Xenopus laevis OX=8355 GN=cirbp-a PE=1 SV=2
Q14011	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05485	THAP	THAP domain	Domain	Interproscan
PF19745	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR027350	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan
IPR045573	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22794	THAP DOMAIN PROTEIN 11	Interproscan
PTHR13132	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006487	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan