Detailed information of g178.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_001641337.1, exosome complex component CSL4 isoform X2 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9Y3B2Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1
Q9DAA6Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1
O59821Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05705DUF829Eukaryotic protein of unknown function (DUF829)DomainInterproscan
PF13912zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF01448ELM2ELM2 domainFamilyInterproscan
PF10447EXOSC1Exosome component EXOSC1/CSL4DomainInterproscan
PF14382ECR1_NExosome complex exonuclease RRP4 N-terminal regionDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008547FamilyProtein of unknown function DUF829, TMEM53Interproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR051066FamilyTranscriptional Regulator and CorepressorInterproscan
IPR000949DomainELM2 domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR019495DomainExosome complex component CSL4, C-terminalInterproscan
IPR039771FamilyExosome complex component Csl4Interproscan
IPR025721DomainExosome complex component, N-terminal domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20908LD15586PInterproscan
PTHR16089REST COREPRESSOR COREST PROTEIN-RELATEDInterproscan
PTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0017171Molecular Functionserine hydrolase activityInterproscan
GO:0000118Cellular Componenthistone deacetylase complexInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0045892Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07573CSL4, EXOSC1; exosome complex component CSL4-Messenger RNA biogenesisko03019deepkoala

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