Gene detail

Detailed information of g1781.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3175343.1, unnamed protein product [Porites lobata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P55096	ATP-binding cassette sub-family D member 3 OS=Mus musculus OX=10090 GN=Abcd3 PE=1 SV=2
P16970	ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus OX=10116 GN=Abcd3 PE=1 SV=3
P28288	ATP-binding cassette sub-family D member 3 OS=Homo sapiens OX=9606 GN=ABCD3 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF06472	ABC_membrane_2	ABC transporter transmembrane region 2	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR002418	Family	Transcription regulator Myc	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050835	Family	ATP-binding cassette sub-family D	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR10328	PROTEIN MAX MYC-ASSOCIATED FACTOR X	Interproscan
PTHR11384	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0090575	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005324	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031	Biological Process	peroxisome organization	Interproscan
GO:0015910	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23937	STX10; syntaxin 10	-	Chromosome and associated proteins	ko03036	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Membrane trafficking	ko04131	deepkoala