Gene detail

Detailed information of g1783.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_012557615.2, DNA polymerase theta isoform X1 [Hydra vulgaris]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

g1783.t1

ATGAACAAACTAACTTCCACTTGGAAACAGAAAAGAAAGTCAGCAGTCAGTAACAATAAATGTATCGAAGGAAATGCAAATACACCATCAAACAGTAAATTTAATGCTGCTACTGGAGTCAATGTGTTTCCTTCTCTTCTCAAAGATGGTCTActagatgaaaatgaaaagcaTGTCACAGTCAATAGTCATAAAGTAGTTGACGAAGTGTGTTCAATCGGACAACAATCATCTTCAAAAGCAGTTTTAGATGATAGCTATCCTCTGTTATCATTTGAATGGGATGAAGGTGACCTCAAAGCTTTAGAAAACATTGAAGCAGGTCAAAGCATAACAAACACAAAACAAAGAACATCACGGAAAAGCCTTCTCAAACAAGATGAAACTTCCAATGATACAACCCATCAATCAACTCCCTACACACTTAGGAGCACAAAATTAACTAATCTCTTATCGCCTGTGTTGCCATTTAAACTATCAACAAATCATAAAAGTAGAAGCGTAAACCCAACTAACGTCAAACAAAAGAACCCATTGCTAATAGAAAACTGGGGTTTACCAAATGAAGTTGTAAAGCAATACAAGCAGAAAGGCATCAATGAAATGTTCCAATGGCAGGTGGATTGTTTGATGACTGGCAATGTACTGAATGGTGGGAATCTAGTGTATTCTGCTCCAACTAGTGCTGGGAAAACACTTGTAGCAGAGATTTTGATGCTCAAACGTGTCCTTGAGAGTAACAGAAAGGCGATATATATCTTACCGTTTGTTAGTGTCACAAGAGAGAAAGTGCATGCACTCAAAACTGTTTTTCAAGACATCAATGTTACTGTCGAAGGTTTCATGGGTTCCCAGGCTCCCCTTAAAGGATTCATGGGATGTGACATTGCTGTTTGTACAATTGAAAAAGCAAATTCACTTGTTAATCGATTGATAGAAGATAAAACAATATTCTCTGTTGGTTGTATAATCCTTGATGAGCTTCATATGCTTGGCGATAGTAGCAGAGGCTATCTTTTAGAACTTATGTTAACAAAATTACTTTATGTGTCTATGTCAGCGAATATTAAATCATCATATGAACTTATGAGTCAAGAAAATAGCAAAATACAGATCATTGGTATGAGCGCCACGCTACCTAATCTTGCCTTAATTGCATCGTGGTTGAGATCAGATttatacattacaacatttcGTCCTGTTGAGTTGATAGAACATGTTAAAGTTGGGCAATCGGTGTTAGATTCAAATGGTAAAGTAATATCAACGATGAAATCTACATCAGCAAAACGCGATGAAGAAGGTCTGGTTGGTTTATGTCATGAGACAGTTCATCAAGGAAATTCTGTTTTAATGTTTTGTCCGACAAAGAATTGGTGTGAGAAATTATGTGAAGTGATTGGTATGGGTTTAATGTTATTTAAAGGggatgaaaaaattgaattagaTAAAGAAGCAGTGAATGAAATTCTAGGACAGTTACAAACAAGCCAGGTTGGTCTGGATCCGTTTCTTTGTGCTTGTGTTAAACATGGCGTTGCATTTCATCACGCTGGATTAACATATGACGAACGAGATATTATTGAAGATGGATTTAGAAAAGGAACAATCAAAGTTTTAATTGCTACGTTGACTCTTTCGTCAGGCGTAAATCTACCAGCAAGGAGAGTCATCATACGAACGCCAATGTTTCATGGAAAACCACTTAATCCTcgtgtttacaaacaaatGGCTGGTCGTGCAGGCAGAAAAGGAGTCGATGATAAAGGAGAAAGTATTTTAATATGTAAGGcgaatgaaaaacaaaatggaTTGCAACTTTTATCAGCTGAGTTGAGCCCTGTTCTAAGTTGTTTGTTGGGTACTGAGCTACAGACAACTATCACAGATGAGAACTTTCCAGAACTCAAACGTGCATTGCTTGAAATCATCTGTTCAGGTGCTGCCAACTCATACAGAGATGTACAGACTTACTCAGATTGTACATTTCTCAAAGCATGTTTAGAAGATGACTgtaaaggatttaaaagtGCACTAGAAAtgacattcaaatatttaatcgATAAAGAATTTCTAAGAATGGCAGTTGTTAAAGATGGTAATATTGATAACACTGCTATCGTAGAGCCAACACAACTAGGAATGGCTACGCTAGCATCAGCATTAGCACCAAAAGAAGCATTAATTGTATTTGCAGAATTAAGAAAAGCAAGACGATGTTTTGTGTTAGAAAATGAACTTCATATCATTTACCAGGTCACGCCGATCAATATCCAGGATCAATTTGCAAATTTAGATTGGTATAAATTCTTTAGCATTTGGGAGCGTTTACCATCCGACCATAAAACAGTGGGTCATTTAGTTGGCGTTGAAGAATCATATTTAACACGAGCACTACACGGTCGAGTATTGACAAGAACCGAGGAAAATCGTACTGCACTCGGTATTCATCGTCGGTTTTTCGCCGCACTTGCGTTACAAGATTTAGTTAATGAAGTACCGTTGATGAAAGTATGTCAGAAGTACGGTGTTAACCGTGGACTTTTACAATCTCTCCAATCGTCGGCTGCAACATTCGCAGGCATGGTaacaaaattttgtcaaaaattagGATGGTGTAATTTAGAATTGATTTTGGCACAATTTCAAAGTCGGTTATCACTTGGTATTAACCGTCAATTATGTGATCTTGCTAGAGTAACATCGTTGAATGGTAACCTTGCGAGGCTATTCTATAATGCTGGTTATCATACTGTATGTCTACTAGCTGCTGCTGATGTTAATCAAATTGAGAAACTACTACGGGAATCGTCACCTTTTGAAAGTAAAAAACAtccaaattattcaaataataaagatcgttttttatttatatctgGTCGACGTGGTCTTACTGAAAAGCAAGCTAGTGAAATTATTCTaaaagaaacaaaagatataaTCGATAATGAAATTGCTAAATTGGGTGGAAAACCATTAGCATTAATTAATCCATCTAATTCtaagaataataaatcaaaatataggAAATCTAAATCAATGACTACAAGGCGAAAGCGTCTAGCTCAAAAACGTTGTGCCTCTGATTCAAGTTCTGGTAACGCAGCAAAGAGGCCATCAGTAACAAGTAGTAGTGATTCATCGACGAGTCTGGTTACTATAGAAACAGAGAATACATCAGCAGTATTagttaatgataataaatctCCTTTGACTTCTGCTGAGGGAGATTTGATGGATTCAAGTAAGGTCGTAAATAGTCCAATCAAAGACAAACTCAATGAGGACGTTAGAAATGAGGAACAAGATAAAATTGCAGCAGGAGAAGACTCGACTTCATCAGATGTGACATCAAATTCATCAGATCTAATTTGCGCATCTCAAGTATCCGCTCCTAGTACATCAATGTTATCAAAAACAGCCGAATGTGATGATGAATGTAATGTAACAGATAGTACAAATGCATCTTTACAATTATCAGATGTGGCCTTATTTGATGATGAACAATTATCTCCATCATCTAACGCCAATATCCAAAGATCTCCTGAATTATGTTTTGACACCGAAGAATGTAATCAATTAtctgatgataataattatatacaattatCACCGGAGAATGAACCGCAACCAAAACTATCATTTAATGATTCTGAACCAAGTGCCAGCCTCCTAATGGCGCTTGATGATTTTGAATCAAAGGCTAACCCTCCTGTTACTAAAATATTCACCAAGATAATAGAAGTTCCTTCGTtgtcaacaaaaacattaaaagATGATCGTATTAATAGACTTGATTATATTTCAACTGGGGTTGTACTTCATGATCATcgaaaacatttgaaagttgaaattattgatattgatactgatgataaaaaatttaaattatttcttaataaTTTAAAGACCAAAGACCGGATATCAATTTCACTTGGTTgtgaattaatttcaaataaatcaaacattgGCCAACCTCAATCTCATTCTACTAATGTTtcatcatatttatttcaatgcgGTAATGAGGTTATTTCTAGTTTAACTTTATCCTGGGGTGATTTCATTGCATATCATTTTAATCTCAAACATTTTGTTGAGAAAACAACAGAATACAAAGTTATAAAAGAACAACTTCAACAAGTAATGAATTGTAtctcaaataaaaaaacacttaTATTATATGATCTTATCcaacaatataaattattttataatttattaaatgttaatctgattggtcaatttgaaGATCCAAAGGTTGCTGATTGGCTACTTGATCAGGACAAAGATGATTGCACATTTCAACAATTATGTCAACAACATTTGTCTCAATCACAAAGCAATTTACTTTCTCGTTTTGGCAAGTGTCTGGATTCAAATGGTCTTGGTAGAACTACACAGCTACGAGGATCAGGTCGTTCCCGTTCTGCAACCGAGGCTATACTGTCATATCAGCTAATGGATGTTATTCGTATTAAACTCAATGCTATTGGTTTAACCAAATCTTTCAAAGAGGTTGAAATGCCAACAAATGCCATCCTGTCGAAAATGCAATGTATTGGTATCGGTATGTCTGTAGAAGAATGTTCTAGAATAGAAAAGGTATTAATATCTAGGCAACATGAATTAGAAAGCGAATGCTATCTCAAAAGTGGACAAAAGTTTTCATTAGCCTCCCCCGAGGAAGTTTCCCGCGTTTTATTTATCCATCTTAAATTGCCAAATGAGGCTGGAACTGAGGCTAACGGAAGGCGGAGCTTAAGAAGCGGAGTGCGTCATCTGTCGACGAAAAAACTTGTTTTGGAGAAGCTTGCAGACGTGCACATCCTTCCTCGTTTGATAATTGAGTGGCGTAAAATTCATAACACGTTAATAAAAGTCATTAGACCCCTACTTCGTATTTGTTCTCAGATCACGAACGATGAACGTCCCACAAGTTACACACGAATTTTTCCACAACCACATTTTCGTACGGCAACCGGACGGATAGCATTTTCTGAACCAAATCTACAGAGTATTCCAAAAGATTTTGACATAGAACTTTCATCACTACCAGGCAATGAATCGAGAAACTCATTTATAAGTTTGCGGACATCTTTTATACCGCGGGAAGGATATGTTTTCGTTAGCGCTGATTACTGTCAAATGGAATTACGAATAATTGCTCATCTTGCCAACGATAAACTGTTATTACGGATATTATCAAATCGTCATGGTGATGTATTTAAATCGATTGCAGCTGAAACTAATAACGTTAATGTTAATGACGTTACTAATGAATTACGTCAACGTGCTAAACAGATGTGCTACGGTATAATTTACGGAATGGGGAGGAAACTATTAGCGGATCAATTAAACGTAGATGAAAAATCAGCTGATATATTCATCAATGCATTCAAATCACGTTTTATTCACGTTACTAAATATGTTGAAGAGACTGTAAAATTTGCACATAATAATGGCTACGTTACAACGTTATCTAATAGACGCcgtttattaaaatcaattcatTCGCGTAACGTTGCAGAAAGAGCGCAAGCTGAACGTCAAGCAGTTAATACTACGGTACAAGGTTCTGCTGCTGATTTAACTAAATGTGCCATGATATCCATTGACAAAGAATTACAGAAATCTCCATTCGCTGATAAAGCGTATATCGTACTGCAATTACACGATGAACTTATGTATGAAGTTGACGTTAAGTATACTGACGACGTTATTTGTATAATACGGCGTGAAATGGAAAACGCGATTCATTTAAAAGTGATAACTCCTGTTAAAGTTCGCGTTGGAAAATCCTGGGGCGAGTTAATTGAAATGTAA

Transcript

g1783.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18475	DNA polymerase theta OS=Drosophila melanogaster OX=7227 GN=PolQ PE=1 SV=1
O75417	DNA polymerase theta OS=Homo sapiens OX=9606 GN=POLQ PE=1 SV=2
Q8CGS6	DNA polymerase theta OS=Mus musculus OX=10090 GN=Polq PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004235 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20470 all species →	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF21099 all species →	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR046931 all species →	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR019760 all species →	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR048960 all species →	Domain	POLQ-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02349	POLQ; DNA polymerase theta	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.