Gene detail

Detailed information of g17935.t1 in Montipora capitata

Genomic Location: Sc0000836:15565...26617
NR annotation: XP_015774738.1, PREDICTED: smad nuclear interacting protein 1-like [Acropora digitifera]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BIZ6	Smad nuclear-interacting protein 1 OS=Mus musculus OX=10090 GN=Snip1 PE=1 SV=1
Q5M9G6	Smad nuclear interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Snip1 PE=1 SV=1
Q8TAD8	Smad nuclear-interacting protein 1 OS=Homo sapiens OX=9606 GN=SNIP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050923 all species →	Family	Cellular Process Regulator and RNA Processing Protein	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23308 all species →	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0035196 all species →	Biological Process	miRNA processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13108	SNIP1; smad nuclear-interacting protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.