Genomic Location: not available for this species
NR annotation: CAB4026521.1, Hypothetical predicted protein [Paramuricea clavata]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q5XF78 | Gibberellic acid methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GAMT2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000000 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000006 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000989 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0011227 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03492 all species → | Methyltransf_7 | SAM dependent carboxyl methyltransferase | Family | Interproscan |
| PF18701 all species → | DUF5641 | Family of unknown function (DUF5641) | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005299 all species → | Family | SAM dependent carboxyl methyltransferase | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR040676 all species → | Domain | Domain of unknown function DUF5641 | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31009 all species → | S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN | Interproscan |
| PTHR22955 all species → | RETROTRANSPOSON | Interproscan |
| PTHR19446 all species → | REVERSE TRANSCRIPTASES | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0008757 all species → | Molecular Function | S-adenosylmethionine-dependent methyltransferase activity | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
g1798.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
