Gene detail

Detailed information of g18.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: NDE90968.1, hypothetical protein [Alphaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50748	Kinetochore-associated protein 1 OS=Homo sapiens OX=9606 GN=KNTC1 PE=1 SV=1
Q8C3Y4	Kinetochore-associated protein 1 OS=Mus musculus OX=10090 GN=Kntc1 PE=1 SV=2
Q8BL99	Protein DOP1A OS=Mus musculus OX=10090 GN=Dop1a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000337 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000574 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002440 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004572 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04118 all species →	Dopey_N	Dopey, N-terminal	Repeat	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF10493 all species →	Rod_C	Rough deal protein C-terminal region	Family	Interproscan
PF00082 all species →	Peptidase_S8	Subtilase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007249 all species →	Domain	Dopey, N-terminal	Interproscan
IPR040314 all species →	Family	Protein dopey	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR019527 all species →	Domain	RZZ complex, subunit KNTC1/ROD, C-terminal	Interproscan
IPR052802 all species →	Family	Kinetochore-associated RZZ complex protein	Interproscan
IPR036852 all species →	Homologous_superfamily	Peptidase S8/S53 domain superfamily	Interproscan
IPR034061 all species →	Domain	Autotransporter serine protease peptidase domain	Interproscan
IPR023828 all species →	Active_site	Peptidase S8, subtilisin, Ser-active site	Interproscan
IPR015500 all species →	Family	Peptidase S8, subtilisin-related	Interproscan
IPR000209 all species →	Domain	Peptidase S8/S53 domain	Interproscan
IPR050131 all species →	Family	Subtilisin-like serine protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14042 all species →	DOPEY-RELATED	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR15688 all species →	KINETOCHORE-ASSOCIATED PROTEIN 1	Interproscan
PTHR43806 all species →	PEPTIDASE S8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006895 all species →	Biological Process	Golgi to endosome transport	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000070 all species →	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005828 all species →	Cellular Component	kinetochore microtubule	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:1903394 all species →	Biological Process	protein localization to kinetochore involved in kinetochore assembly	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g18.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →