Genomic Location: not available for this species
NR annotation: XP_012556570.1, roundabout homolog 1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| O77628 | Protein c-Fos OS=Bos taurus OX=9913 GN=FOS PE=2 SV=2 |
| P01100 | Protein c-Fos OS=Homo sapiens OX=9606 GN=FOS PE=1 SV=1 |
| P01101 | Protein c-Fos OS=Mus musculus OX=10090 GN=Fos PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000006 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000549 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000756 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001546 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003741 (this species only) · gene tree & orthology |
| Transcription factor family | TF_bZIP · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00270 all species → | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF00170 all species → | bZIP_1 | bZIP transcription factor | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050079 all species → | Family | DEAD box RNA helicase | Interproscan |
| IPR014014 all species → | Domain | RNA helicase, DEAD-box type, Q motif | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR011545 all species → | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR002126 all species → | Domain | Cadherin-like | Interproscan |
| IPR015919 all species → | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR004827 all species → | Domain | Basic-leucine zipper domain | Interproscan |
| IPR000837 all species → | Family | AP-1 transcription factor | Interproscan |
| IPR046347 all species → | Homologous_superfamily | Basic-leucine zipper domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47959 all species → | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | Interproscan |
| PTHR23351 all species → | FOS TRANSCRIPTION FACTOR-RELATED | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003724 all species → | Molecular Function | RNA helicase activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 all species → | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
g1802.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
