Gene detail

Detailed information of g1809.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002157291.1, polycomb protein eed-A [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q3SZ25	Polycomb protein EED OS=Bos taurus OX=9913 GN=EED PE=2 SV=1
O75530	Polycomb protein EED OS=Homo sapiens OX=9606 GN=EED PE=1 SV=2
Q921E6	Polycomb protein EED OS=Mus musculus OX=10090 GN=Eed PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF05793	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051243	Family	Polycomb group WD repeat-containing protein	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR008851	Family	Transcription initiation factor IIF, alpha subunit	Interproscan
IPR011039	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR038774	Family	Centrosomal protein CEP162-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR10253	POLYCOMB PROTEIN	Interproscan
PTHR13011	TFIIF-ALPHA	Interproscan
PTHR34031	CENTROSOMAL PROTEIN OF 162 KDA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0006342	Biological Process	heterochromatin formation	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035098	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0001096	Molecular Function	TFIIF-class transcription factor complex binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005674	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0005879	Cellular Component	axonemal microtubule	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11462	EED; polycomb protein EED	-	Chromosome and associated proteins	ko03036	deepkoala