Gene detail

Detailed information of g1815.t1 in Acropora digitifera

Genomic Location: chr1Alt:30123089...30127753
NR annotation: XP_029210291.1, N-alpha-acetyltransferase 50-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XGA9	N-alpha-acetyltransferase 50 OS=Xenopus tropicalis OX=8364 GN=naa50 PE=2 SV=1
Q6DBY2	N-alpha-acetyltransferase 50 OS=Danio rerio OX=7955 GN=naa50 PE=1 SV=1
Q0IIJ0	N-alpha-acetyltransferase 50 OS=Bos taurus OX=9913 GN=NAA50 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR051556 all species →	Family	N-terminal and lysine N-acetyltransferase	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42919 all species →	N-ALPHA-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan
GO:0031415 all species →	Cellular Component	NatA complex	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20793	NAA50, NAT5; N-alpha-acetyltransferase 50	EC:2.3.1.258 EC:2.3.1.309	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g1815.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

119.4Max TPM

89.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	88.99	119.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	119.39
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	114.08
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	112.47
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	110.60
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	110.39
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	109.75
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	107.07
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	105.36
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	103.75
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	102.36
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	97.58
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	97.34
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	96.39
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	95.20
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	94.56
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	94.03
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	93.99
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	91.00
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	89.58
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	89.57
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	89.45
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	88.16
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	85.20
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	84.93
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	82.79
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	81.05
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	80.99
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	78.65
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	78.20
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	76.19
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	74.72
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	74.37
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	73.47
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	69.59
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	65.86
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	65.82
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	64.37
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	64.06
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	58.28

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.