Gene detail

Detailed information of g18250.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: CAB3980855.1, bifunctional polynucleotide phosphatase kinase isoform X2 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g18250.t1

ATGGAGTGCAAATTATTTCCTTTAGATGGAGGACATCAGCCTATACTTTTACCCCATGCAAAAACTGTAACAATCGGCCGTGGACCATCGACGCGAATTACAGACAAACGTATTTCGAGAGAGCAAGtTCAGCTAACTGCAGATTATGAATCAAGAGAAGTGGCCTTGAAGCAGCTCGGAAGCAACCCTGGAGCAATGGGACATTCAGTTATCAAGCAAGGAACTGTGATTGTATTGAAACCAGCCGAGACGTTTAGTCTTCTACAGAAAAAGTTTAGGTATAACATACAATTTATTGATATGACTGATCCAGGCTCAGATACTACACCGACGAAAGAAAGTAGATTTGGTAGACATGAGCTATATCGTAAATCAGATCATTTACTAAATGCATCACCTGCAAACTCTGTTGGGGGTCGATCAGACGATGAAGCTAGATCAACAGACTCTGAAATTGACCCTGAAATCAACGGCAGAGTTAAAACCGGAAAACCTATTGGTCGAGTCAGTAGTTTCAAAAAGAGGATACGACAATCGTTCAATCGTAAAAAGAACAGAGATCCTGATCAACCTGATGGATTATCTGATGACGGAAGATGCAGCGGAAGTGATAGTGAGACTGCTCCTAGAGAAACACGGAAAATATCACCGGCGAGTGCAATCATGAGAGTTAGTCAAacagaattatatttatttggaTGTGATACCGCGCCTTGCAGTCCATGTAACTCTGATATTGATGATTCTGAAACGGATGATACTGCGAGAAGAGATTTTGGTGATGatttagttcatgaaattaataaaGTAAGAGACAGAACAAGGACAAGTACGTCTAATCGTAGCTCATTGGTTATTGATGTGCCGCTACTGGCTTTGAAAGGAGAAGCGCAATGGGTGTCTAGAGAAGGATTATTAATTTATAGCGGCAAAGATTTATGCGCAAGCTCACAGATTGCTGGTTTTGATTACGATGGAACCATGGTGACAACAATTTCAGGAGAAACTTTCCCAGAATATGCTGATGATTGGAGgACTCTTTACTCAAActgcaaatcaaaattaaacgACCTGAGAAATAAAGGTTTCAAGATTGCAATATTTACTAATCAGAAAAGTCTtggaaaattcaatttaaccaCAGAAGATTTTCAAAGGCGAATAGAACAATTTGAAGAATATTTAGAGATTTCAATACAGTGTTTTATATCAATTCGTAAAGATATTTATCGGAAGCCTTCACCTGGTATGTGGGACCTTCTTTGTCGAGAGTTTAATCATTCAATGGACGTACTGCTTGATAAATCATTATACGTCGGAGATGCGGCAGGACGACCAGAAGATTTCAGTTTATTGCAAAAAGAAGATCATTCTTGTTGTGACCGATGCTTTGCTCGAAATGTTGGTGTGAAATTCTATACTCCAGAGGAGTTCTTTGATGGCACACCAACTCAGACTTTCAATTGGCCAAACTTTGACCctGTTAGCGTCTATCGTAATATGTCACCTTTATTTCCTGTTCATACAATTTTATGTGCATCAAAACAAGAGATAATTGTGATGGTTGGATGGCCAGCCTCTGGTAAAACAACATTTCTCGAACGGCATTTACTGCAACAAAGTGATAGCTACGCTTCATGTGTTACTGAAGATCAGTGTCATACGCAGTTGTCAAACGGCCGATCTGTCATCATCGACTCATCAAACCCAGACGTTCAATCTCGGAAAAGGTTTATTGATATTGCAAAGGAAAAAGACATCAGTTGCCGCTGTTTCCACATGAAAACATCTGAAGATCATTCTCGTCACAATGCAACGTTTTGTGAGTTAACATCATATGAACCAGACTCATCGAGAATTAGCAGCAAAGCATTTAGGCAATATAATGCAAGTTTCCAGATTCCAACAACGGAGGAAGGATTCGAAGAAGTTGTCCCAATTAATTTTATACCATCTTTTAATGACAAAAGCAAAGAACGTTTGTATTTCTCGTTTTTGATATAG

Transcript

g18250.t1

Protein

Uniprot

Uniprot term	Description
Q19683	Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans OX=6239 GN=F21D5.5 PE=2 SV=2
Q96T60	Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens OX=9606 GN=PNKP PE=1 SV=1
Q9JLV6	Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus OX=10090 GN=Pnkp PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13671	AAA_33	AAA domain	Domain	Interproscan
PF17913	FHA_2	FHA domain	Domain	Interproscan
PF08645	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041388	Domain	PNK, FHA domain	Interproscan
IPR006551	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013954	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR006549	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0046403	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939	Biological Process	obsolete nucleotide phosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08073	PNKP; bifunctional polynucleotide phosphatase/kinase	EC:3.1.3.32 EC:2.7.1.78	DNA repair and recombination proteins	ko03400	deepkoala