Gene detail

Detailed information of g183.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_052283344.1, RIIa domain-containing protein 1-like [Dreissena polymorpha]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIN7	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Pomgnt1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q91X88	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Mus musculus OX=10090 GN=Pomgnt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000020 (this species only)
Orthogroup (gene family)	OG0000939 (this species only)
Orthogroup (gene family)	OG0001543 (this species only)
Orthogroup (gene family)	OG0002159 (this species only)
Orthogroup (gene family)	OG0005928 (this species only)
Orthogroup (gene family)	OG0008302 (this species only)
Orthogroup (gene family)	OG0008467 (this species only)
Orthogroup (gene family)	OG0008898 (this species only)
Orthogroup (gene family)	OG0009971 (this species only)
Orthogroup (gene family)	OG0012708 (this species only)
Orthogroup (gene family)	OG0013519 (this species only)
Orthogroup (gene family)	OG0059561 (this species only)
Orthogroup (gene family)	OG0059655 (this species only)
Orthogroup (gene family)	OG0173906 (this species only)
Orthogroup (gene family)	OG0174527 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07819 all species →	PGAP1	PGAP1-like protein	Family	Interproscan
PF09230 all species →	DFF40	DNA fragmentation factor 40 kDa	Domain	Interproscan
PF02017 all species →	CIDE-N	CIDE-N domain	Domain	Interproscan
PF07731 all species →	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF03071 all species →	GNT-I	GNT-I family	Family	Interproscan
PF07732 all species →	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan
PF00394 all species →	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF03870 all species →	RNA_pol_Rpb8	RNA polymerase Rpb8	Family	Interproscan
PF00755 all species →	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012908 all species →	Family	GPI inositol-deacylase PGAP1-like	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR039529 all species →	Family	GPI inositol-deacylase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR039729 all species →	Family	DNA fragmentation factor 40	Interproscan
IPR015311 all species →	Domain	DNA fragmentation factor 40, C-terminal	Interproscan
IPR003508 all species →	Domain	CIDE-N domain	Interproscan
IPR011706 all species →	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR008972 all species →	Homologous_superfamily	Cupredoxin	Interproscan
IPR004139 all species →	Family	Glycosyl transferase, family 13	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR011707 all species →	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR001117 all species →	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR052463 all species →	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR005570 all species →	Family	DNA-directed RNA polymerases I, II, and III subunit RPABC3	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000542 all species →	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551 all species →	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15495 all species →	NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED	Interproscan
PTHR13067 all species →	CASPASE-ACTIVATED DNASE	Interproscan
PTHR46396 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR10917 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	Interproscan
PTHR22589 all species →	CARNITINE O-ACYLTRANSFERASE	Interproscan
PTHR15505 all species →	RIIA DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006505 all species →	Biological Process	GPI anchor metabolic process	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0050185 all species →	Molecular Function	phosphatidylinositol deacylase activity	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0004536 all species →	Molecular Function	DNA nuclease activity	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223 all species →	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0004095 all species →	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0009437 all species →	Biological Process	carnitine metabolic process	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02311	DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit	EC:3.-.-.-	Apoptosis	ko04210	deepkoala
K03016	RPABC3, RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.