Gene detail

Detailed information of g183.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_052283344.1, RIIa domain-containing protein 1-like [Dreissena polymorpha]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5XIN7	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Pomgnt1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q91X88	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Mus musculus OX=10090 GN=Pomgnt1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07819	PGAP1	PGAP1-like protein	Family	Interproscan
PF09230	DFF40	DNA fragmentation factor 40 kDa	Domain	Interproscan
PF02017	CIDE-N	CIDE-N domain	Domain	Interproscan
PF07731	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF03071	GNT-I	GNT-I family	Family	Interproscan
PF07732	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan
PF00394	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF15711	ILEI	Interleukin-like EMT inducer	Domain	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF03870	RNA_pol_Rpb8	RNA polymerase Rpb8	Family	Interproscan
PF00755	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012908	Family	GPI inositol-deacylase PGAP1-like	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR039529	Family	GPI inositol-deacylase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR039729	Family	DNA fragmentation factor 40	Interproscan
IPR015311	Domain	DNA fragmentation factor 40, C-terminal	Interproscan
IPR003508	Domain	CIDE-N domain	Interproscan
IPR011706	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR008972	Homologous_superfamily	Cupredoxin	Interproscan
IPR004139	Family	Glycosyl transferase, family 13	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR011707	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR001117	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR039477	Domain	ILEI/PANDER domain	Interproscan
IPR052463	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR005570	Family	DNA-directed RNA polymerases I, II, and III subunit RPABC3	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000542	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR039551	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15495	NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED	Interproscan
PTHR13067	CASPASE-ACTIVATED DNASE	Interproscan
PTHR46396	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan
PTHR24246	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR10917	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	Interproscan
PTHR22589	CARNITINE O-ACYLTRANSFERASE	Interproscan
PTHR15505	RIIA DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006505	Biological Process	GPI anchor metabolic process	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0050185	Molecular Function	phosphatidylinositol deacylase activity	Interproscan
GO:0004520	Molecular Function	DNA endonuclease activity	Interproscan
GO:0004536	Molecular Function	DNA nuclease activity	Interproscan
GO:0006309	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0016266	Biological Process	O-glycan processing	Interproscan
GO:0030173	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0004095	Molecular Function	carnitine O-palmitoyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0009437	Biological Process	carnitine metabolic process	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02311	DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit	EC:3.-.-.-	DNA repair and recombination proteins	ko03400	deepkoala
K02311	DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit	EC:3.-.-.-	Apoptosis	ko04210	deepkoala