Gene detail

Detailed information of g18303.t1 in Montipora capitata

Genomic Location: Sc0000874:59987...62458
NR annotation: XP_044170512.1, extended synaptotagmin-3-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g18303.t1

atggtatctctgatagactgcttaattttagattctcaaggagtaaatttgaaatcgtatgatatcatcgcagttggtgaaatgaaatcgaatgtaattgttgctgattttcatattgcaggcagatctgagaccattgccagattacgaaaaatgcgagataaaagcagcccgatcttacgaagattagtccaagctttctcgaagaattatcaaaggcgacttttcttttatttaattgtggcttccatgctgtggttatggggaagatgggatatgagttttgcgtggattttggtcataatttcaatctatttactaggggaatatcgttcgcaagaaagaaaacgaaagcggcgtacattccatcaattgttggacgaatcgaacttctcgaaagtcggttctttcaagttaccgccccagcatcttacagacaaggagaacgcggcgtggatcaatgaaataattaatagatcatggtcgtcgatcaagggattgacacgaagtatcttgatcgaacatgtggagccagaactacagaaaaggctcccagcggcgttgaagagtttgcgttttgacaagattgaactcggcaaaataccaccgtatatcggaaatataacttcgtacggtcgccagggcaacagccggccttccgaatatatgatggatgtcgatgtgttttacaaaggcgatgcacaaatgaaatttaccgtgaaaaatgtgaaaatgggaattacagatttccaagttcacggaacgcttcgaatcattttaaaacccttgttttcctttccgccaatcatcggtggagttacggtatttttccttaagaggccgaacattgcttttaatttgaccaatatgctgaatgtactggagattccaggactgaataaaaccctgcggcatatcgttgatgacgtcatagctgccaatgttgtccttcccaataggattgcaattccattggcgggaagagtggacgtcagcgacttgcaatacccggtccccgagggactgctacgcgtccatttagtagaagcgagggaactgctagcttcagatgcttcattaatcggttcgggttcctcagatccctacgcagtccttgaggtcggcgctcaaacatttcgcaccgaaacgaagaaaaatgattcgaacccagtatggcaagagacgttcgaagcattcgtggacaattcagaaggacaagaattgcaaatttccttttatgacaatgatgtcacttcaaaagatacaaaactcggcaaggttaatttgaacatctgttctgtcgtcgaagggggagccctggacatttggatgcctctaagtaaggccaaacaaggtaaagtccacttgaaagttgactggtttgccctcagtagtcacccccttcatttcagatacaccaaagaacccgaaagcgtagcagtcttgatagtcaagttgatcaaggtgaagaatctaagccgtaagaaatccgcattgacaagaaaggtacattgtgtggtgactgtaggaaaaaactctttatctagcgcatgcgcgcatggagatgagccaacatggaatgaatctctgcaatttttgttgactgatccgcatgaagaagcccgtgttgaagtcatggaaggcgattcttccgtggggtttgtgttgttcactgctagaaagctcatagatctgcaagacatgactttgcaggacacttttccattgcaaagcaccactgccggaaacggaaatgggagctgcgtcacatgtaagtttgttctgcgtgctttaaaggctgtgggcgcccccggtggttccggtttcttgaagactgaccggaagtttcgagcatgcgatgataacgaccactgtcctcaaaggctggacacaccgacaatgatcccggaagttgatggtcatggttcctctttatccactgagaatgtcagcagtggatcaactgagaaggcatcaacttccggttctggttcagtatgtaattcctcgccaagtggtagcattattgatgagggctctaaggggcaagatctcgatgtctcgggactagattacccctcccgaggggaagtctcattgagtttgatctacaatcatcgaagaaaccgcctcatggtaaccattctcaacgccaaaataatatcctcgtccttgccagcttccaaggcaaacctttacgttcaaaccaatctgctaccttctcgatccaagaaaactgtgcgcaaaacttttactttcccaggaaatttaaatcccatattcaatgagagtttcgactacgtcatcggactcgatcagttagtggatagagaactgcaagttgctgttcaaaacgagaagcgtgtacaattaccgcggaaacagcgtgaattgatcggatcatcttctattaaactctgtgatttgagtttgtctgctggcgtgacgcttacttgcgagttgaacaaataa

Transcript

g18303.t1

ATGGTATCTCTGATAGACTGCTTAATTTTAGATTCTCAAGGAGTAAATTTGAAATCGTATGATATCATCGCAGTTGGTGAAATGAAATCGAATGTAATTGTTGCTGATTTTCATATTGCAGGCAGATCTGAGACCATTGCCAGATTACgaaaaatgcgagataaaagcAGCCCGATCTTACGAAGATTAGTCCAAGCTTTCTCGAAGAATTATCAAAGGCgacttttcttttatttaattgTGGCTTCCATGCTGTGGTTATGGGGAAGATGGGATATGAGTTTTGCGTGGATTTTGGTCATAATTTCAATCTATTTACTAGGGGAATATCGTTCGcaagaaagaaaacgaaagcgGCGTACATTCCATCAATTGTTGGACGAATCGAACTTCTCGAAAGTCGGTTCTTTCAAGTTACCGCCCCAGCATCTTACAGACAAGGAGAACGCGGCGTGGATCAATGAAATAATTAATAGATCATGGTCGTCGATCAAGGGATTGACACGAAGTATCTTGATCGAACATGTGGAGCCAGAACTACAGAAAAGGCTCCCAGCGGCGTTGAAGAGTTTGCGTTTTGACAAGATTGAACTCGGCAAAATACCACCGTATATCGGAAATATAACTTCGTACGGTCGCCAGGGCAACAGCCGGCCTTCCGAATATATGATGGATGTCGATGTGTTTTACAAAGGCGATGCACAAATGAAATTTACCGTGAAAAATGTGAAAATGGGAATTACAGATTTCCAAGTTCACGGAACGCTTCGAATCATTTTAAAACCCTTGTTTTCCTTTCCGCCAATCATCGGTGGAGTTACGGTATTTTTCCTTAAGAGGCCGAACATTGCTTTTAATTTGACCAATATGCTGAATGTACTGGAGATTCCAGGACTGAATAAAACCCTGCGGCATatcgttgatgacgtcatagctgCCAATGTTGTCCTTCCCAATAGGATTGCAATTCCATTGGCGGGAAGAGTGGACGTCAGCGACTTGCAATACCCGGTCCCCGAGGGACTGCTACGCGTCCATTTAGTAGAAGCGAGGGAACTGCTAGCTTCAGATGCTTCATTAATCGGTTCGGGTTCCTCAGATCCCTACGCAGTCCTTGAGGTCGGCGCTCAAACATTTCGCACCGAAACGAAGAAAAATGATTCGAACCCAGTATGGCAAGAGACGTTCGAAGCATTCGTGGACAATTCAGAAGGACAAGAATTGCAAATTTCCTTTTATGACAATGATGTCACTTCAAAAGATACAAAACTCGGCAAGGTTAATTTGAACATCTGTTCTGTCGTCGAAGGGGGAGCCCTGGACATTTGGATGCCTCTAAGTAAGGCCAAACAAGGTAAAGTCCACTTGAAAGTTGACTGGTTTGCCCTCAGTAGTCACCCCCTTCATTTCAGATACACCAAAGAACCCGAAAGCGTAGCAGTCTTGATAGTCAAGTTGATCAAGGTGAAGAATCTAAGCCGTAAGAAATCCGCATTGACAAGAAAGGTACATTGTGTGGTGACTGTAGGAAAAAACTCTTTATCTAGCGCATGCGCGCATGGAGATGAGCCAACATGGAATGAATCTCTGCAATTTTTGTTGACTGATCCGCATGAAGAAGCCCGTGTTGAAGTCATGGAAGGCGATTCTTCCGTGGGGTTTGTGTTGTTCACTGCTAGAAAGCTCATAGATCTGCAAGACATGACTTTGCAGGACACTTTTCCATTGCAAAGCACCACTGCCGGAAACGGAAATGGGAGCTGCGTCACATGTAAGTTTGTTCTGCGTGCTTTAAAGGCTGTGGGCGCCCCCGGTGGTTCCGGTTTCTTGAAGACTGACCGGAAGTTTCGAGCATGCGATGATAACGACCACTGTCCTCAAAGGCTGGACACACCGACAATGATCCCGGAAGTTGATGGTCATGGTTCCTCTTTATCCACTGAGAATGTCAGCAGTGGATCAACTGAGAAGGCATCAACTTCCGGTTCTGGTTCAGTATGTAATTCCTCGCCAAGTGGTAGCATTATTGATGAGGGCTCTAAGGGGCAAGATCTCGATGTCTCGGGACTAGATTACCCCTCCCGAGGGGAAGTCTCATTGAGTTTGATCTACAATCATCGAAGAAACCGCCTCATGGTAACCATTCTCAACGCCAAAATAATATCCTCGTCCTTGCCAGCTTCCAAGGCAAACCTTTACGTTCAAACCAATCTGCTACCTTCTCGATCCAAGAAAACTGTGCGCAAAACTTTTACTTTCCCAGGAAATTTAAATCCCATATTCAATGAGAGTTTCGACTACGTCATCGGACTCGATCAGTTAGTGGATAGAGAACTGCAAGTTGCTGTTCAAAACGAGAAGCGTGTACAATTACCGCGGAAACAGCGTGAATTGATCGGATCATCTTCTATTAAACTCTGTGATTTGAGTTTGTCTGCTGGCGTGACGCTTACTTGCGAGTTGAACAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M7N9	Extended synaptotagmin-3 OS=Xenopus tropicalis OX=8364 GN=esyt3 PE=2 SV=1
Q3TZZ7	Extended synaptotagmin-2 OS=Mus musculus OX=10090 GN=Esyt2 PE=1 SV=1
A0FGR8	Extended synaptotagmin-2 OS=Homo sapiens OX=9606 GN=ESYT2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001222 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g18303.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g18303.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

13.0Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	5.21	12.27
whole organisms · low pH treatment	15	14	5.35	11.32
whole organisms · extra low pH treatment pH treatment	12	12	5.49	13.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.27
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.35
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.34
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	10.99
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	10.67
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	9.73
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	6.70
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	6.17
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	6.15
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.63
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	4.48
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.61
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	2.82
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	2.79
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.87
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.96
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.86
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.49
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.28
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.24
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.05
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.32
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.52
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.64
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	8.03
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.98
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	6.89
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	6.50
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	5.58
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.89
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	4.84
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.00
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.61
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.82
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.66
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.02
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	10.41
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	9.50
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	9.38
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	7.93
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	5.08
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	3.94
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.63
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.74
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.63
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.35
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.26

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.