Gene detail

Detailed information of g18341.t1 in Acropora digitifera

Genomic Location: chr8Alt:23633305...23645155
NR annotation: XP_015759600.1, PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107338862 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g18341.t1

ATGGCGAACTGGGATGAATTTTTCGCTAAAGAACAAGCTCCTGCGAACTTGAAAGAAGTTAAATCCACAATCAGCGCATTTGCAGCATCTCATCGATCAGCTGGAAGAGATATCGTCTTTGTGACGTCTGGAGGCACGCGTGTACCATTGGAGGAAAATGCTGTGCGTTTCATTGACAACTTTAGCATTGGAACTAGAGGTGCTTCCTCAGTCGAATATTTTCTGGAGCATGGTTATGCAGTAATATTCCTACATAGGCAAGGGTCCCTCCAGCCATTCTCACGCAACTTTCCCTCTCATGACGTTCTGGACCTTCTCCAGCTGAAAGATTTGCCAGATGGATCCAACCAGTTGGAAGTTAATCCTTGTAAAGTGGCAAAACTGTCCAAGGTTCTCAAAATGCATAGACAAGTACGAGTATCTGGTACATTGCTTATGATTGAGTTCAATAGTCTGTTTGAGTACCTCTTTCTCCTGAGGGGTGTGGCTGAGTCTCTTGCAAGCCATGGGCCCAATGTGATGTTGTACTTGGCAGCGGCTGTCTCGGACTTCTACATTCCATCTCAAAGCAGGCCTCAGCATAAGATTTCCTCTGATGTTCCACTGCAATTGAACTTGGTTCAAGTCCCAAAAATGATGACACCACTTGTTAAGGAATGGATTCCGCGAGCTTTCACAGTTTCGTTCAAGTTAGAAACAGATGTGAACATTATCTCCAAGAAGGCAAGACAGTCTTTGGCAAAGTATTCACATCAGGTGGTGGTATCCAACATTTTACAAACACGGAAAAAGACTGTTGTGATGATCACACCAACCCAAGAGAGAGCCATATGGATGTCTGATTCAGAGCTAGAGGCAGGTCAAGAAATTGAGGAAAAGATTGTAGCTGACCTTAAGGAAATGCATCAGCAGTTTATAGCTTCCTCGGTGTTGCAAGGTGCAAGTAATACCAAGCCAGTTATTGTATCTGATCAGATACCATCCAATGACCAGGTTGGACAGTTTATCACCACTCAGATACAGGCCATTCCTTCTCACAGCACTGATGGTGTCATCTCAGGGTTCACCTCCTACAACATCCCAACAGCCTCTCTTGGTCTCCCTCATGCTTCAGCCATATCTCAGATCTCACCATCAAAGAATGGAGAAGCATCCCTGGTTCATGGCCACACCCAAGGCAGTGTGTCAGATATGTCAGATCTGTCAAGTTCTCCTGGGCAGTTGTTTGGTACACTGTCAGACACTTGTTTGACGTCAGATATGAAAGACTTTATAGAGTCATTCAGGGCCCGCCGCATTGCGCTGGGATACACCCAAGAAGATGTTGGTAATGAGCTTTCCCACACCAATGGCCATTCTTCTTACAGCCAGTCATTTATCTCTCGATTTGAATCCAAAAATCTTGGTTTAAAGGCTGCTGAAAAAATGAAGCCAGTGCTTCAGGCATGGATAGAACAAAAGGAGCAAGAATGTGCCAAGGGGTTACGCATGTGCAAAAAGCGTAAAAGAAGAACTTCCTTTTCAAATGAAACCCTGCAGCTGTTGATCCACAGTTTCGAACAGAACCCAAAACCTACCAGCACTGAAATTGCGGCAATTTCTTCAAAGTTAGGCTTGGAGCCTGTAACTGTTCGAGTTTGGTTCTGCAACCGCAAACAAATGATGAAGCGAATGGCTACAGGCAAAGGACATGCAGTTCATTCCTTCAAGGCAGAACTGGATGCCAAGAAACAAGATGAACAAGTCTCGGCCAAAAAGGAGCCTCAAGCTAAGTTAGACTTCACCAACATGCCAGTTGGGCAGTTCTCATTCACAGAGGATCGTGTTAAAGCCCTGGTGTGTTTGTCTTCTGATGGAAGCCCAGTAAAGAGCTCGCATCCTGCACCATCCTCTGCGACAGTGAACTATGCACAGGTGCATGATGACAGCATCATCCGTGCAGTCCCAGAAGCCCGTAACACCTTGCAGGAGAATCCTCCGCAGGGATCTGCCGCTTCAGAGCGATATGGGTCAAGTAATGTACAGTTTCCATTGGGACGAAATGGCACAAATACCGTTGCACCTTTTGATGCAGCCACAAATGCAGCTGTGACTGACTCATAG

Transcript

chr8Alt.g18341.t1

GCAGGCCAATATTTCATGTTGGCTTACCAATTAGAGTTCCCGTACTTAATTCCCTTTACTTCACAACAGAAAAGATTATTTTTGCATTATGTTGAAAAGGAAATAAGGAGATCACTTCCTATGCGAAACTGAAAGTTCGCAAATAAATTTGTTTGATTTCAAGATAACAATCATAGACCTTCTTTGCATGTTTTCCTATGCCCTTCTCTGATTGGCTGCAGAAATTAGCCCAGAATAATGTATGCACAACTCGTCAAATTATTCATTTACTTCTCCATTTTACGGCGTTGAATTTGCGTTCATTAATCGAGATTTCTGCGGCTAGAGAATGCCTTTTTCGTGAAAAAGAAGTTATTTCTGGATATCTTGAAAAAATAAGTCAATCTTTGACCCTGGTCAGAGCAGCAAAACACTTTTTCTGCGGCGAAATCAAAGTCGAATAACTAATGAGGGATAATTCATGAATCATGGCGAACTGGGATGAATTTTTCGCTAAAGAACAAGCTCCTGCGAACTTGAAAGAAGTTAAATCCACAATCAGCGCATTTGCAGCATCTCATCGATCAGCTGGAAGAGATATCGTCTTTGTGACGTCTGGAGGCACGCGTGTACCATTGGAGGAAAATGCTGTGCGTTTCATTGACAACTTTAGCATTGGAACTAGAGGTGCTTCCTCAGTCGAATATTTTCTGGAGCATGGTTATGCAGTAATATTCCTACATAGGCAAGGGTCCCTCCAGCCATTCTCACGCAACTTTCCCTCTCATGACGTTCTGGACCTTCTCCAGCTGAAAGATTTGCCAGATGGATCCAACCAGTTGGAAGTTAATCCTTGTAAAGTGGCAAAACTGTCCAAGGTTCTCAAAATGCATAGACAAGTACGAGTATCTGGTACATTGCTTATGATTGAGTTCAATAGTCTGTTTGAGTACCTCTTTCTCCTGAGGGGTGTGGCTGAGTCTCTTGCAAGCCATGGGCCCAATGTGATGTTGTACTTGGCAGCGGCTGTCTCGGACTTCTACATTCCATCTCAAAGCAGGCCTCAGCATAAGATTTCCTCTGATGTTCCACTGCAATTGAACTTGGTTCAAGTCCCAAAAATGATGACACCACTTGTTAAGGAATGGATTCCGCGAGCTTTCACAGTTTCGTTCAAGTTAGAAACAGATGTGAACATTATCTCCAAGAAGGCAAGACAGTCTTTGGCAAAGTATTCACATCAGGTGGTGGTATCCAACATTTTACAAACACGGAAAAAGACTGTTGTGATGATCACACCAACCCAAGAGAGAGCCATATGGATGTCTGATTCAGAGCTAGAGGCAGGTCAAGAAATTGAGGAAAAGATTGTAGCTGACCTTAAGGAAATGCATCAGCAGTTTATAGCTTCCTCGGTGTTGCAAGGTGCAAGTAATACCAAGCCAGTTATTGTATCTGATCAGATACCATCCAATGACCAGGTTGGACAGTTTATCACCACTCAGATACAGGCCATTCCTTCTCACAGCACTGATGGTGTCATCTCAGGGTTCACCTCCTACAACATCCCAACAGCCTCTCTTGGTCTCCCTCATGCTTCAGCCATATCTCAGATCTCACCATCAAAGAATGGAGAAGCATCCCTGGTTCATGGCCACACCCAAGGCAGTGTGTCAGATATGTCAGATCTGTCAAGTTCTCCTGGGCAGTTGTTTGGTACACTGTCAGACACTTGTTTGACGTCAGATATGAAAGACTTTATAGAGTCATTCAGGGCCCGCCGCATTGCGCTGGGATACACCCAAGAAGATGTTGGTAATGAGCTTTCCCACACCAATGGCCATTCTTCTTACAGCCAGTCATTTATCTCTCGATTTGAATCCAAAAATCTTGGTTTAAAGGCTGCTGAAAAAATGAAGCCAGTGCTTCAGGCATGGATAGAACAAAAGGAGCAAGAATGTGCCAAGGGGTTACGCATGTGCAAAAAGCGTAAAAGAAGAACTTCCTTTTCAAATGAAACCCTGCAGCTGTTGATCCACAGTTTCGAACAGAACCCAAAACCTACCAGCACTGAAATTGCGGCAATTTCTTCAAAGTTAGGCTTGGAGCCTGTAACTGTTCGAGTTTGGTTCTGCAACCGCAAACAAATGATGAAGCGAATGGCTACAGGCAAAGGACATGCAGTTCATTCCTTCAAGGCAGAACTGGATGCCAAGAAACAAGATGAACAAGTCTCGGCCAAAAAGGAGCCTCAAGCTAAGTTAGACTTCACCAACATGCCAGTTGGGCAGTTCTCATTCACAGAGGATCGTGTTAAAGCCCTGGTGTGTTTGTCTTCTGATGGAAGCCCAGTAAAGAGCTCGCATCCTGCACCATCCTCTGCGACAGTGAACTATGCACAGGTGCATGATGACAGCATCATCCGTGCAGTCCCAGAAGCCCGTAACACCTTGCAGGAGAATCCTCCGCAGGGATCTGCCGCTTCAGAGCGATATGGGTCAAGTAATGTACAGTTTCCATTGGGACGAAATGGCACAAATACCGTTGCACCTTTTGATGCAGCCACAAATGCAGCTGTGACTGACTCATAGGAGGGCAATAAATGGATTTGCAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VDG5	Phosphopantothenate--cysteine ligase OS=Mus musculus OX=10090 GN=Ppcs PE=1 SV=1
Q9HAB8	Phosphopantothenate--cysteine ligase OS=Homo sapiens OX=9606 GN=PPCS PE=1 SV=2
Q69S81	Phosphopantothenate--cysteine ligase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0575200 PE=2 SV=1

Gene family

Family type	Membership / link
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF04127 all species →	DFP	DNA / pantothenate metabolism flavoprotein	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR007085 all species →	Domain	DNA/pantothenate metabolism flavoprotein, C-terminal	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan
IPR035929 all species →	Homologous_superfamily	CoaB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01922	PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)	EC:6.3.2.51	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.