Gene detail

Detailed information of g18342.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_027038958.1, protein HIRA-like [Pocillopora damicornis]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

g18342.t1

ATGTTTAGAAAGGACAGAAATCGACATGGAGGCGGTCTCCTGGTCTATGTAttaaatacaatgaaaccaaGACAAAGACCTCTGTTCTATAATGGGGACAAAGAAATCCTCTGCATTGAAATAGACCTTAAAACAAAGAAAGTTGTTATGGTATTTGCTTACAGACCACCTTCTTGCAATCCGGCTGAATTCTTATCTGCTTTGGAAATAACTATAAGTCAAATACGTCTTGCACACTTAGATTTCTGTATAGCTCTGCAAGaatttataaatgacaatTCGCTCGTAAACCTAGTAAGCACAGAAACACGTCCAGTATCTAGATCGTTGCTTGACGTAATCATTACAAGCTGCCCAAgaAAAGCCATTTTTTCCATTGATATTCACCCTGACGGGTCAAAGTTTGCGACTGGCGGACAAGGTGAAGATTGCGGTTTGATTGTTATATGGAATCTGTTACCTGTGAGATACGAAACGGAAGAAAAAGATGAAAACACGCCAAGGGTATTATGCCAGATGGACAACCATTCAGGCTGCGTCAATTGTTTACGTTGGTCATACAATGGGCAGTATCTGGCATCAGGAAGCGATGATAAATGCATAATGATTTGGCAATGTCAAAgAACGCAATATGATGATGCTACTTCAACGTCAAGTCAACATTGGCGCTGTGCATTTGTGCTAAGAGGTCATTCTGAAGATGTCCTAGATGTGTCATGGTCGCCAGATGATAAATTCCTTGCATCCGGTAGCGTGGATAACTCTATCATCATTTGGAACGCTAATAACTTCCCAGAAGCACTTCATACCCTCAAACACCACAGGGGCCTGGTCAAGGGTGTAACATGGGACCCAGTTGGTCGATACTTCGCATCACAGTCTGATGATAAGTCACTTTGCATTTGGAGAACATCAGATTGGCAACCAGAACAGAGAATCACCGAACCATTTGCAGAGTGCAGCGGAACAACGCACGTCCTCCGCCTCGATTGGTCAACAGATGGGCAATACTTGGTTTCGGCCCATGCCATGAATAAGGGCGGTCCTGTTGCTAAAATCATCAATCGCGATGGATGGAATGCGAAAATGGATTTTGTAGGCCACAGAAAAGCTGTTACTTGTGTGcgattcaaTAGACGTCTTTTCACAAAGTCAACACAAACAACGTCATCAACAATCAAGCAATATTCCTGTTGTGCAATTGGCAGCAAAGATCGCTCCCTGTCTGTCTGGttgACGACATTGAAACGTCCATTGGTTGTCACGCATGGTCTATTCAAAAGCTCCATTATGGATATTGCATGGAGTTCATGTGGATCCATCCTCCTGGCTTGTTCTTTGGACGGCACGGTTGCGTTTCTTGAATTTGAAGCAAGCGAACTGGGAGACCCAATCTCTGAAGAAGAAAAGTTTGTTTACCACAAAAAAGCCCATGGTACTAACATCAAGAGTAGCACTACTTCATTTGCTTCTTCATTCGTTGAGAACCCAgatattttaaacataaagACAACAGCAGCAGCTAAATCAAATACTTCAATCAATGCAACTCATCAAGGTCAAAGTGAAATTAGGAAACCAAAGATGTCTTCTTTCTCTGGGGAAGGTTTTGGAGTTAGACAACTCAGTTTTACAACCGCAACAACAGAAGAAAGGAAAGCTGCTCTGGAAGTTCTGAAGCAGCAGAAAGAAACCATTACAGATACGGGCAAGAGAAGGATCACTCCCCTTTCGTTCGCGTTGTCAAGGGGCATTCTCAAAAGTACAACACAACCAACTGGGTTCACAGTTAAACGTAAACAGGATGGAATGTCTTTTGGGGAAAGAAAGAAAGGGAAGAAGGAGAAAGACAAGTCAAAAGATAAAGCAGAAAAGATAGACACGGGAAAGAAAGCGGATGACGATGGACGCACCATAATTGATGCTAACGATGCTGGTAACAGCActgaaaaaagtaatttagtTTGCATTCCTTATCCAAAAGCTGAAAGTAAATTGTGTGTCAAGGTTCCTTGTAGATCCCACTATGAAACAGAAACAACTGTTGAAGCAGAGAACTTACTTTCGCAAGCCGCAAAAGGGATTCATTTTTTGAGATGTTCAGAGGGTGATCATGTGATCTGGGAGATGGTAGTCATGGCGCCCATTACTTTGATTGCAGTTAGCTGTGATGTCGTTGCTGCTGCATGTTCAGATCAAACCATTCATGTTTTCAGCAGGAAAGGATCAAGAGTATTTCCACCGTTATTGATGGAGCATCCTGTTTCGTATCTCGAATGCAGCAAGCATTACATTGTGGCAGTGACGTCCTTGGGTTATCTCAGCATGTGGTCTTCACGCGACCATGTCATTGTTattaaacaacaaacaattgGTAGCATATTGAAAGATGGTAATGCTGTTGTTAATAAAGTGATTGTTACCGAGAAGGGATGCCCTGTGGTCTGCTTATCTGATGGCTCTGTCTTCTCTTTCCTATCAAACCTACATTCATGGGTGCCACTCAACTATTTTGTCAGCCCATTGCAATCATATATGAATTTTCAGCCAAGGGATAATAATGCCAGCGTTAGTGCGATACTGAAATCAGTTAGTGACTCAACCCAATGGTTGTTTCAATCGACAATCGAGTTGGTCACTGCAGATGAATTCATCCCGTCAGCAGTCAGCTACGATCAGTCAAATCCAGGTTGTGAAGGTATGCTGAGAGACATGTGCCAAGATCTTTTCAGACCTTCATCCAGTGTTGCCATGTGTCATCAAAAGCGATCTCTTCTGCAAGATGTCCTGTCCGTTATAGgatccaatttgcaatttcaaagACTCTATGCTGAATACAAAGATCTTCTAGATGCAACTAAGTGA

Transcript

g18342.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61666	Protein HIRA OS=Mus musculus OX=10090 GN=Hira PE=1 SV=3
P79987	Protein HIRA OS=Gallus gallus OX=9031 GN=HIRA PE=1 SV=2
P54198	Protein HIRA OS=Homo sapiens OX=9606 GN=HIRA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004897 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07569 all species →	Hira	TUP1-like enhancer of split	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011494 all species →	Domain	Protein HIRA-like, C-terminal	Interproscan
IPR031120 all species →	Family	WD repeat HIR1-like	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13831 all species →	MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000417 all species →	Cellular Component	HIR complex	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0006336 all species →	Biological Process	chromatin organization	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11293	HIRA, HIR1; protein HIRA/HIR1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.