Gene detail

Detailed information of g18365.t1 in Montipora capitata

Genomic Location: Sc0000884:75893...83120
NR annotation: XP_029182893.2, integrator complex subunit 14-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g18365.t1

atgacattatgcacattcaatgctcgttcggtcaaaaacaagagcgctgatatcgtggactatgtttgcgattgtaaagctgatctttttgccattacggagacttggctgagcgccgatgatgcggctgtacgggcggaattgtaccctgacgggtacaagtttatagaccacctccggtttggacgtcgtggtggtggaacaggactagtatatcggagttcattgggcattaagaaagttgacgcgggagaaagggcttcgtttgaattctccgagtggattgatacgtcaccatctctgtacattcttcgccttgttatcatctatcgtccaccatactctgatgaacacagagtcaccaccaatgccttctttacagagttctcgaattatctcgaatccatcctattgtccaaagagcagctactgataaccggcgactttaatatccatgttgatattgttgatgaccccgactctctcaagttactcgatctcttggaatctcttgatcttcggcaacacgtcagccagcctacccatgttcacggacacacgctggatctcattatcacccgatactcagatcaaattgtccagcatccaccacaaactgatcgatttatttcggaccatgcatcgcttctttgcaagctacttcatgttaaaccggctgtgactactaatgtggtcacttacaggaaacttcaatcagtggacatggattcactcaaaaatgacctagctgcctctgaattatgtcaaaaacaacctgaagaattatctaatttcgccccggagggagttgacgcgcttttatgtaactataacgctactttgtccagaatgatcaatcgtcatgcgccattaaaggaaaagactttgagggctaggccaagggtgccttgcaatgttactgaaaagagctttgtaatgccgacagttgtactcctcgatgtttctctgtctatgctgcggcgtgtcaaaacgccagacgaagaacttgttgagcgcaagcaactggccattcgtggtcttcacgtattctttgacttgttatctagcaagttcaagcttgaattttcagctttgttggctttttcgtcgctttgggaaattgttgtacctttcacgagagattaccaatctctgaaacaaggctgtataacagttgatacttacgacaagaccagctttgataatggcttcagtggagttgtaggccatgttatcgaagaatggggaacatcagtaccttgccaagtgatcttagttaccgatgggcggacagggtctgggcaaggttcattgagagatctcctggatggcaaaagagccaacaagggcaacccagatcatgaccaaccaagcccttttccaataccatttccctgtaaaatacatgttgtatgtattgcaaactcaaatgaattaggggcagacttgatgctatttcaaaggctttgcgactcgactggtgtagggggaagtgtttatgttcctgatatgccactgactgtccaatcagttcagaatgcattcatgcgccttgcacaaactcactatatcagctatgaaggaactctatcgtgtggacatttgcagtccaagataacactgtcgccgccacctgacttcacaactgtacttgagacatccaggaaaaccagtggtcaagaaaagaacaggaggttgccaaatgagctgtcgatatgtggatttcttgatgtggcagacattggaagtccacctcatttatcccgacatctggtcataccaattccaacagcagcggcagatggcaaggaaaaagaaggaggcaaagacacaaccaaggatggtgaagaggatgggaaaattccatgtttttgtgtgctgcttcatggaagtcttaaggttgaaaaaatggtggcaatcgtgtctttagattctgactggtttggtatgctacactcatgggctgacagcaaaaagaaatcaaatctggtattgactacattcaagccaggagaaaacataccatggcttggaaacatacagaaactgggtcctgcagcagagcttgatataaatccttatcagtcagctgataatgacgaagcagagacttcaccctttccagtcatgccaagtcaaaggagaagctataactcacaagctaatgttgtttggatcaaacccagtggattacaggttcatgtagtgtaa

Transcript

g18365.t1

ATGACATTATGCACATTCAATGCTCGTTCGGTCAAAAACAAGAGCGCTGATATCGTGGACTATGTTTGCGATTGTAAAGCTGATCTTTTTGCCATTACGGAGACTTGGCTGAGCGCCGATGATGCGGCTGTACGGGCGGAATTGTACCCTGACGGGTACAAGTTTATAGACCACCTCCGGTTTGGACGTCGTGGTGGTGGAACAGGACTAGTATATCGGAGTTCATTGGGCATTAAGAAAGTTGACGCGGGAGAAAGGGCTTCGTTTGAATTCTCCGAGTGGATTGATACGTCACCATCTCTGTACATTCTTCGCCTTGTTATCATCTATCGTCCACCATACTCTGATGAACACAGAGTCACCACCAATGCCTTCTTTACAGAGTTCTCGAATTATCTCGAATCCATCCTATTGTCCAAAGAGCAGCTACTGATAACCGGCGACTTTAATATCCATGTTGATATTGTTGATGACCCCGACTCTCTCAAGTTACTCGATCTCTTGGAATCTCTTGATCTTCGGCAACACGTCAGCCAGCCTACCCATGTTCACGGACACACGCTGGATCTCATTATCACCCGATACTCAGATCAAATTGTCCAGCATCCACCACAAACTGATCGATTTATTTCGGACCATGCATCGCTTCTTTGCAAGCTACTTCATGTTAAACCGGCTGTGACTACTAATGTGGTCACTTACAGGAAACTTCAATCAGTGGAcatggattcactcaaaaatgACCTAGCTGCCTCTGAATTATGTCAAAAACAACCTGAAGAATTATCTAATTTCGCCCCGGAGGGAGTTGACGCGCTTTTATGTAACTATAACGCTACTTTGTCCAGAATGATCAATCGTCATGCGCCATTAAAGGAAAAGACTTTGAGGGCTAGGCCAAGGGTGCCTTGCAATGTTACTGAAAagagctttgtaatgccgacAGTTGTACTCCTCGATGTTTCTCTGTCTATGCTGCGGCGTGTCAAAACGCCAGACGAAGAACTTGTTGAGCGCAAGCAACTGGCCATTCGTGGTCTTCACGTATTCTTTGACTTGTTATCTAGCAAGTTCAAGCTTGAATTTTCAGCTTTGTTGGCTTTTTCGTCGCTTTGGGAAATTGTTGTACCTTTCACGAGAGATTACCAATCTCTGAAACAAGGCTGTATAACAGTTGATACTTACGACAAGACCAGCTTTGATAATGGCTTCAGTGGAGTTGTAGGCCATGTTATCGAAGAATGGGGAACATCAGTACCTTGCCAAGTGATCTTAGTTACCGATGGGCGGACAGGGTCTGGGCAAGGTTCATTGAGAGATCTCCTGGATGGCAAAAGAGCCAACAAGGGCAACCCAGATCATGACCAACCAAGCCCTTTTCCAATACCATTTCCCTGTAAAATACATGTTGTATGTATTGCAAACTCAAATGAATTAGGGGCAGACTTGATGCTATTTCAAAGGCTTTGCGACTCGACTGGTGTAGGGGGAAGTGTTTATGTTCCTGATATGCCACTGACTGTCCAATCAGTTCAGAATGCATTCATGCGCCTTGCACAAACTCACTATATCAGCTATGAAGGAACTCTATCGTGTGGACATTTGCAGTCCAAGATAACACTGTCGCCGCCACCTGACTTCACAACTGTACTTGAGACATCCAGGAAAACCAGTGGTCAAGAAAAGAACAGGAGGTTGCCAAATGAGCTGTCGATATGTGGATTTCTTGATGTGGCAGACATTGGAAGTCCACCTCATTTATCCCGACATCTGGTCATACCAATTCCAACAGCAGCGGCAGATGGCAAGGAAAAAGAAGGAGGCAAAGACACAACCAAGGATGGTGAAGAGGATGGGAAAATTCCATGTTTTTGTGTGCTGCTTCATGGAAGTCTTAAGGTTGAAAAAATGGTGGCAATCGTGTCTTTAGATTCTGACTGGTTTGGTATGCTACACTCATGGGCTGAcagcaaaaagaaatcaaatctGGTATTGACTACATTCAAGCCAGGAGAAAACATACCATGGCTTGGAAACATACAGAAACTGGGTCCTGCAGCAGAGCTTGATATAAATCCTTATCAGTCAGCTGATAATGACGAAGCAGAGACTTCACCCTTTCCAGTCATGCCAAGTCAAAGGAGAAGCTATAACTCACAAGCTAATGTTGTTTGGATCAAACCCAGTGGATTACAGGTTCATGTAGTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZK21	Integrator complex subunit 14 OS=Gallus gallus OX=9031 GN=INTS14 PE=2 SV=1
Q96SY0	Integrator complex subunit 14 OS=Homo sapiens OX=9606 GN=INTS14 PE=1 SV=2
Q8R3P6	Integrator complex subunit 14 OS=Mus musculus OX=10090 GN=Ints14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13519 all species →	VWA_2	von Willebrand factor type A domain	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF19435 all species →	IntS14_b-barrel	Integrator complex subunit 14, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR039841 all species →	Family	Integrator complex subunit 14	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR045814 all species →	Domain	Integrator complex subunit 14, beta-barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13532 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g18365.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.