Gene detail

Detailed information of g1843.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032241050.2, uncharacterized protein LOC5515387 [Nematostella vectensis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q16AV0	Lysine--tRNA ligase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=lysS PE=3 SV=1
B0T2A6	Lysine--tRNA ligase OS=Caulobacter sp. (strain K31) OX=366602 GN=lysS PE=3 SV=1
Q9ABY6	Lysine--tRNA ligase OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=lysS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF01921	tRNA-synt_1f	tRNA synthetases class I (K)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR002904	Family	Lysine-tRNA ligase	Interproscan
IPR001412	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR020751	Homologous_superfamily	Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2	Interproscan
IPR008925	Homologous_superfamily	Aminoacyl-tRNA synthetase, class I, anticodon-binding superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46580	SENSOR KINASE-RELATED	Interproscan
PTHR34222	GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37940	LYSINE--TRNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004824	Molecular Function	lysine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006430	Biological Process	lysyl-tRNA aminoacylation	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000049	Molecular Function	tRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04566	lysK; lysyl-tRNA synthetase, class I	EC:6.1.1.6	Transfer RNA biogenesis	ko03016	deepkoala