Gene detail

Detailed information of g18430.t1 in Montipora capitata

Genomic Location: Sc0000892:57974...77281
NR annotation: XP_044178100.1, LOW QUALITY PROTEIN: calmodulin-binding transcription activator 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g18430.t1

atgacagccgagcaggaatctaggttgcagtcaagctccccagatatcgctttgcccgaaaaattagcgaaaatcaagaaagcggataacttgccggccataaaatacaaatggaacggtaacgaggaagtcctctcctttctgacaagttttagcaaccataaagcttgggtatccagagatgttccagacaggccggaaaatggatccatgtttctttttgatcggagcaaggtgaaaaactatcgcaaggatggctacacttggaagaagagaaggtcaggaaataccatacgggaggaccacacccgactgaaggtcaatggagtcgagtgtcttagtgtgctgtacactcattctgctctcgtgccgacatttcatcgtcgatgctattggatgcttcagaatccgcaaatagttttggttcattacttgaatttggtggaagaatgcagcaaacctatcacagtgtcagtgtacacatcgcccgacagccaagacgatatctctcagcaattggatgctatctattctggcgtttccgaggatgtcaaacccgatgtcacggtttctgaagagagtccgccggcatcaccatcttcctctgaggaaggcgaggcagtttcatctaaaggaaaaaagactcgaaaacgtaacaaatcagtgtataagatctccatctcacctaacaaaagccttcagccaaaagccaaggaaggaaaactgcgcataaaaatgatcaaagtcaccaaaaacgatcaagggcgtttaactgtaacggggcatagagaaggttcgccttcgctagaagatgacaccctacctaaggaagggaacggtgatcaccgtcaaaacacgagtcagtcagcgttttcctcattatcacgtgattgtcacatttttgacagcggtgcgcaaaacttatctcagctacagtctccgggagacgtgtccatactttctgtcgttcccatggtaacaaattcgtctgcgtccacgttgtcatatcaattgcagaatttgacaaacagcaccagaaatgtcacttcgacgtcaaattctcagtttctgcctcagaatcagatttcgaatgaaatacagattaaccaactctctcaagagtcttgtcataccggtggaatccagtggaattcgatctttattcaccctcgcgtagccgagttaggaagcagtccatccagcgattatggaagttatatgtctgatgctggaacccggcttagttactcgggatccgattccgtgattggcgggattcccgctcaaaatatcccggactcggatcagtgcttgtttaatggtccgtttcgagttccccttcccgtcgatcgagattgccaatcacgattcactgattcatcgaaaaatgatgaaatattgtcccgtcaaagccaatccggaagttgtactgtgacggattctgcgcctggagtatcccaaccttctaacagcagtgaggatactgtggacatgactgacttaacacctttagattctctcgagtttgatgacatgttcgaatacgatttaagccatgtcatgccagagtgtttcacagattgccttaaatcgccaccgaaagagaacgaaagtgttcctacaacgctcgctagcgtttgcctcgagccgagcttctcttcagctgtaaacacaacgtcgtctccttccacgccgactttgtttacttccggcagccaaatcgcacagcaatccaggagttttgctcaaggtaccacttgcggtgtatcatccactacctacgtacttgttaaacccgtcagtccgaatagaagctctgttgtgacgccatgttttgctaacgttagcaagaactctctgacgtgtacatccgggatctcagaagtgaatagcccccaggctttggacgttggaaggagagaatcaagcgagataaccatgtcaggtgtcgccgaaactcggacagtttcagatagtacgccaaaccaaatttcgctcgttcaatcttcggcgcaaacatttaaccgtcaatccgctgtcccattgcccaatgacgtaaacaataactattctcgtacagccgatagagggaaaatcactgttacgcattcttcgcatccagagagtcttgtcgttccagggtccgctcgcatctctgatttttctcccgagtggtgttacccagaaggtggagcgaaagttttgataaccggcgaatggagaacggagcagggcgtcttcacgtgtttgtttgacggttgtagcgtgcccgcggtcctttatcaactgggcgtcctccgatgtttttgtccgccgcacgatcccggcctagttactcttcaggtggcctgcaacgggtttatcgtcagcaacgcatgcgtgtttgagtaccgcacacgtgattcgccggtcggcaacgcgagctgtcacgagtggctcgcgaccgatgacgaccggtttaaactggctttactggatcgcttggagagactagagtccagacgcaatgccagggaaacaaataacttcagcaatgaaaaacaagggaagcaatgcaggacgttcgaggagcggctcattgttgcttgcgaggttctgcagcacgcatcaggtgacgacaaaaactcagcgcgaggcacgaagccattccgaggaatgacactccttcatttgtctgctgcgttggggtacaacagacttgtgtgtgttctgctgaaatattggcgtcaaagtaaaagcgggctggttagagatgaattaaacccgcttaggaaggacgagtttggttgtacgcctcttatttgggcatgcgcattgggtcagactgtcaccacgttaactttattggagaccgagcccaaagcgttgctggaacctgatgcacggggtcgcatgccactgcagctggcaagagacaggggcttccttgatgtcgtggacgtaatcgaagatttcgtcgtgtccatgccaaataggcgtatttttgtggaggtggttcacgattcagagggttctccatcacctgaggcctcgtcttgtgagggctcccctcagcctctatccctggctcctaactctggtccctttctggcggcccatggggacaccccaatggcggaaagagcgggctctccgatgttcgttgatgaggaggaagatacagagcagctgcagatgagtataaggccagtcaatactctagcgaaaactttagttcagatacactcgatgattaacgaagccgaacaagaagcagaactcggtcatcgcctgcccggacatttgtcacctcttcaagaaaacgccgaactcgttacatccgggacttggggcgcgccaatgaggctgcgcagcttcagttcagcttcgtcccagtcttcccctctgacgccttgctcttccaaatcttcgctctctccaggctctcctggcttcttaaattcgccccattcttcccctgccgggccggatacgactgaattccaagagttcatctcaagctctcgtaagatgctggaaagagatttgtcagacttgactttgactgatcgagagcagcgggagctttatgaagctgctaagattattcagaacgcatacagaaactacaaggtaaacaaggtctcattgtttccgaaaagaccattttctttattgtaa

Transcript

g18430.t1

ATGACAGCCGAGCAGGAATCTAGGTTGCAGTCAAGCTCCCCAGATATCGCTTTGCCCGAAAAATTAGCGAAAATCAAGAAAGCGGATAACTTGCCGGCCATAAAATACAAATGGAACGGTAACGAGgAAGTCCTCTCCTTTCTGACAAGTTTTAGCAACCATAAAGCTTGGGTATCCAGAGATGTTCCAGACAGGCCGGAAAATGGATCCATGTTTCTTTTTGATCGGAGCAAGGTGAAAAACTATCGCAAGGATGGCTACACTTGGAAGAAGAGAAGGTCAGGAAATACCATACGGGAGGACCACACCCGACTGAAGGTCAATGGAGTCGAGTGTCTTAGTGTGCTGTACACTCATTCTGCTCTCGTGCCGACATTTCATCGTCGATGCTATTGGATGCTTCAGaATCCGCAAATAGTTTTGGTTCATTACTTGAATTTGGTGGAAGAATGCAGCAAACCTATCACAGTGTCAGTGTACACATCGCCCGACAGCCAAGACGATATCTCTCAGCAATTGGATGCTATCTATTCTGGCGTTTCCGAGGATGTCAAACCCGATGTCACGGTTTCTGAAGAGAGTCCGCCGGCATCACCATCTTCCTCTGAGGAAGGCGAGGCAGTTTCATCTAAAGGAAAAAAGACTCGAAAACGTAACAAATCAGTGTATAAGATCTCCATCTCACCTAACAAAAGCCTTCAGCCAAAAGCCAAGGAAGGAAAACTGCGCATAAAAATGATCAAAGTCACCAAAAACGATCAAGGGCGTTTAACTGTAACGGGGCATAGAGAAGGTTCGCCTTCGCTAGAAGATGACACCCTACCTAAGGAAGGGAACGGTGATCACCGTCAAAACACGAGTCAGTCAGCGTTTTCCTCATTATCACGTGATTGTCACATTTTTGACAGCGGTGCGCAAAACTTATCTCAGCTACAGTCTCCGGGAGACGTGTCCATACTTTCTGTCGTTCCCATGGTAACAAATTCGTCTGCGTCCACGTTGTCATATCAATTGCAGAATTTGACAAACAGCACCAGAAATGTCACTTCGACGTCAAATTCTCAGTTTCTGCCTCAGAATCAGATTTCGAATGAAATACAGATTAACCAACTCTCTCAAGAGTCTTGTCATACCGGTGGAATCCAGTGGAATTCGATCTTTATTCACCCTCGCGTAGCCGAGTTAGGAAGCAGTCCATCCAGCGATTATGGAAGTTATATGTCTGATGCTGGAACCCGGCTTAGTTACTCGGGATCCGATTCCGTGATTGGCGGGATTCCCGCTCAAAATATCCCGGACTCGGATCAGTGCTTGTTTAATGGTCCGTTTCGAGTTCCCCTTCCCGTCGATCGAGATTGCCAATCACGATTCACTGATTCATCGAAAAATGATGAAATATTGTCCCGTCAAAGCCAATCCGGAAGTTGTACTGTGACGGATTCTGCGCCTGGAGTATCCCAACCTTCTAACAGCAGTGAGGATACTGTGGACATGACTGACTTAACACCTTTAGATTCTCTCGAGTTTGATGACATGTTCGAATACGATTTAAGCCATGTCATGCCAGAGTGTTTCACAGATTGCCTTAAATCGCCACCGAAAGAGAACGAAAGTGTTCCTACAACGCTCGCTAGCGTTTGCCTCGAGCCGAGCTTCTCTTCAGCTGTAAACACAACGTCGTCTCCTTCCACGCCGACTTTGTTTACTTCCGGCAGCCAAATCGCACAGCAATCCAGGAGTTTTGCTCAAGGTACCACTTGCGGTGTATCATCCACTACCTACGTACTTGTTAAACCCGTCAGTCCGAATAGAAGCTCTGTTGTGACGCCATGTTTTGCTAACGTTAGCAAGAACTCTCTGACGTGTACATCCGGGATCTCAGAAGTGAATAGCCCCCAGGCTTTGGACGTTGGAAGGAGAGAATCAAGCGAGATAACCATGTCAGGTGTCGCCGAAACTCGGACAGTTTCAGATAGTACGCCAAACCAAATTTCGCTCGTTCAATCTTCGGCGCAAACATTTAACCGTCAATCCGCTGTCCCATTGCCCAATGACGTAAACAATAACTATTCTCGTACAGCCGATAGAGGGAAAATCACTGTTACGCATTCTTCGCATCCAGAGAGTCTTGTCGTTCCAGGGTCCGCTCGCATCTCTGATTTTTCTCCCGAGTGGTGTTACCCAGAAGGTGGAGCGAAAGTTTTGATAACCGGCGAATGGAGAACGGAGCAGGGCGTCTTCACGTGTTTGTTTGACGGTTGTAGCGTGCCCGCGGTCCTTTATCAACTGGGCGTCCTCCGATGTTTTTGTCCGCCGCACGATCCCGGCCTAGTTACTCTTCAGGTGGCCTGCAACGGGTTTATCGTCAGCAACGCATGCGTGTTTGAGTACCGCACACGTGATTCGCCGGTCGGCAACGCGAGCTGTCACGAGTGGCTCGCGACCGATGACGACCGGTTTAAACTGGCTTTACTGGATCGCTTGGAGAGACTAGAGTCCAGACGCAATGCCAGGGAAACAAATAACTTCAGCAATGAAAAACAAGGGAAGCAATGCAGGACGTTCGAGGAGCGGCTCATTGTTGCTTGCGAGGTTCTGCAGCACGCATCAGGTGACGACAAAAACTCAGCGCGAGGCACGAAGCCATTCCGAGGAATGACACTCCTTCATTTGTCTGCTGCGTTGGGGTACAACAGACTTGTGTGTGTTCTGCTGAAATATTGGCGTCAAAGTAAAAGCGGGCTGGTTAGAGATGAATTAAACCCGCTTAGGAAGGACGAGTTTGGTTGTACGCCTCTTATTTGGGCATGCGCATTGGGTCAGACTGTCACCACGTTAACTTTATTGGAGACCGAGCCCAAAGCGTTGCTGGAACCTGATGCACGGGGTCGCATGCCACTGCAGCTGGCAAGAGACAGGGGCTTCCTTGATGTCGTGGACGTAATCGAAGATTTCGTCGTGTCCATGCCAAATAGGCGTATTTTTGTGGAGGTGGTTCACGATTCAGAGGGTTCTCCATCACCTGAGGCCTCGTCTTGTGAGGGCTCCCCTCAGCCTCTATCCCTGGCTCCTAACTCTGGTCCCTTTCTGGCGGCCCATGGGGACACCCCAATGGCGGAAAGAGCGGGCTCTCCGATGTTCGTTGATGAGGAGGAAGATACAGAGCAGCTGCAGATGAGTATAAGGCCAGTCAATACTCTAGCGAAAACTTTAGTTCAGATACACTCGATGATTAACGAAGCCGAACAAGAAGCAGAACTCGGTCATCGCCTGCCCGGACATTTGTCACCTCTTCAAGAAAACGCCGAACTCGTTACATCCGGGACTTGGGGCGCGCCAATGAGGCTGCGCAGCTTCAGTTCAGCTTCGTCCCAGTCTTCCCCTCTGACGCCTTGCTCTTCCAAATCTTCGCTCTCTCCAGGCTCTCCTGGCTTCTTAAATTCGCCCCATTCTTCCCCTGCCGGGCCGGATACGACTGAATTCCAAGAGTTCATCTCAAGCTCTCGTAAGATGCTGGAAAGAGATTTGTCAGACTTGACTTTGACTGATCGAGAGCAGCGGGAGCTTTATGAAGCTGCTAAGATTATTCAGAACGCATACAGAAACTACAAGGTAAACAAGGTCTCATTGTTTCCGAAAAGACCATTTTCTTTATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6Y1	Calmodulin-binding transcription activator 1 OS=Homo sapiens OX=9606 GN=CAMTA1 PE=1 SV=4
A2A891	Calmodulin-binding transcription activator 1 OS=Mus musculus OX=10090 GN=Camta1 PE=2 SV=1
O94983	Calmodulin-binding transcription activator 2 OS=Homo sapiens OX=9606 GN=CAMTA2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005260 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03859 all species →	CG-1	CG-1 domain	Domain	Interproscan
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005559 all species →	Domain	CG-1 DNA-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23335 all species →	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g18430.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.