Genomic Location: not available for this species
NR annotation: AQZ26747.1, lactate dehydrogenase [Aurelia sp. 1 GW-2014]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| F1QXM5 | Probable D-lactate dehydrogenase, mitochondrial OS=Danio rerio OX=7955 GN=ldhd PE=2 SV=1 |
| Q7TNG8 | Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ldhd PE=1 SV=1 |
| Q86WU2 | Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=LDHD PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000000 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002033 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004544 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00696 all species → | AA_kinase | Amino acid kinase family | Family | Interproscan |
| PF01565 all species → | FAD_binding_4 | FAD binding domain | Domain | Interproscan |
| PF02913 all species → | FAD-oxidase_C | FAD linked oxidases, C-terminal domain | Domain | Interproscan |
| PF03564 all species → | DUF1759 | Protein of unknown function (DUF1759) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036393 all species → | Homologous_superfamily | Acetylglutamate kinase-like superfamily | Interproscan |
| IPR001048 all species → | Domain | Aspartate/glutamate/uridylate kinase | Interproscan |
| IPR001057 all species → | Family | Glutamate/acetylglutamate kinase | Interproscan |
| IPR016169 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 2 | Interproscan |
| IPR016166 all species → | Domain | FAD-binding domain, PCMH-type | Interproscan |
| IPR036318 all species → | Homologous_superfamily | FAD-binding, type PCMH-like superfamily | Interproscan |
| IPR016171 all species → | Homologous_superfamily | Vanillyl-alcohol oxidase, C-terminal subdomain 2 | Interproscan |
| IPR006094 all species → | Domain | FAD linked oxidase, N-terminal | Interproscan |
| IPR004113 all species → | Domain | FAD-binding oxidoreductase/transferase, type 4, C-terminal | Interproscan |
| IPR016164 all species → | Homologous_superfamily | FAD-linked oxidase-like, C-terminal | Interproscan |
| IPR005312 all species → | Family | Protein of unknown function DUF1759 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11063 all species → | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE | Interproscan |
| PTHR11748 all species → | D-LACTATE DEHYDROGENASE | Interproscan |
| PTHR47331 all species → | PHD-TYPE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016301 all species → | Molecular Function | kinase activity | Interproscan |
| GO:0004350 all species → | Molecular Function | glutamate-5-semialdehyde dehydrogenase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| GO:0004458 all species → | Molecular Function | D-lactate dehydrogenase (cytochrome) activity | Interproscan |
| GO:0008720 all species → | Molecular Function | D-lactate dehydrogenase activity | Interproscan |
| GO:1903457 all species → | Biological Process | lactate catabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00102 | LDHD, dld; D-lactate dehydrogenase (cytochrome) | EC:1.1.2.4 | Pyruvate metabolism | ko00620 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
