Detailed information of g1853.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022312657.1, cadherin EGF LAG seven-pass G-type receptor 2-like [Crassostrea virginica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q56598GDP-mannose 4,6-dehydratase OS=Vibrio cholerae OX=666 GN=gmd PE=3 SV=2
Q06952GDP-mannose 4,6-dehydratase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=gmd PE=3 SV=1
Q56872GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=gmd PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05585DUF1758Putative peptidase (DUF1758)FamilyInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00067p450Cytochrome P450DomainInterproscan
PF16363GDP_Man_DehydGDP-mannose 4,6 dehydrataseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008737DomainPeptidase aspartic, putativeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036396Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR001128FamilyCytochrome P450Interproscan
IPR006368FamilyGDP-mannose 4,6-dehydrataseInterproscan
IPR016040DomainNAD(P)-binding domainInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24020COLLAGEN ALPHAInterproscan
PTHR43715GDP-MANNOSE 4,6-DEHYDRATASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0020037Molecular Functionheme bindingInterproscan
GO:0008446Molecular FunctionGDP-mannose 4,6-dehydratase activityInterproscan
GO:0019673Biological ProcessGDP-mannose metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01711gmd, GMDS; GDPmannose 4,6-dehydrataseEC:4.2.1.47
O-Antigen nucleotide sugar biosynthesisko00541deepkoala

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