Gene detail

Detailed information of g186.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002164517.3, uncharacterized protein LOC100198745 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
B8JMH0	Iron-sulfur cluster assembly factor IBA57, mitochondrial OS=Danio rerio OX=7955 GN=iba57 PE=3 SV=1
Q8CAK1	Iron-sulfur cluster assembly factor IBA57, mitochondrial OS=Mus musculus OX=10090 GN=Iba57 PE=1 SV=1
Q5T440	Iron-sulfur cluster assembly factor IBA57, mitochondrial OS=Homo sapiens OX=9606 GN=IBA57 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF01571	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF00246	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000998	Domain	MAM domain	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR051560	Family	MAM domain-containing protein	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017703	Conserved_site	YgfZ/GcvT conserved site	Interproscan
IPR006222	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR045179	Family	YgfZ/GcvT	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000834	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR050821	Family	Cytosolic carboxypeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR23282	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	Interproscan
PTHR22602	UNCHARACTERIZED	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR12756	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007276	Biological Process	gamete generation	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004181	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24637	ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)	EC:2.3.2.-	Mitochondrial biogenesis	ko03029	deepkoala
			Peptidases and inhibitors	ko01002	deepkoala
			Ubiquitin system	ko04121	deepkoala