Gene detail

Detailed information of g18734.t1.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029199833.1, E3 ubiquitin-protein ligase TRIM33-like isoform X2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

g18734.t1

ATGAGCGATGGGGGTGCTTCTGGAAGCGCCGAAGATCTTGAAGAAGACTCCGTGTACATGTTGTGCGGTCTTTGCAGGAAGCCGCCGGTCAACACGAGTCCGAAGCTCTTACCTTGCCTTCATtctttttgtttaaaatgccTAGAGGAGCGTTTCTCTGAACAGCAACAAGAAAAGACGCCTTCAACTTCGGCGAGTTCGTCATCCAGCCCGATTCCAAGACTAAAATGCCCAACTTGCGGGCAAGAGTTTTTAGTTCCACCGAAGGGAGTTGTTGGTTTCCTGGATAATCAGTTCGTTTTAGAAAACCTGGGCAAACTGCAACGAAAGCAAGAAGACGTGAAGCGTTTTTGCACTTCTTGCGAGGACAACAGCCCTGCTTCTTCTTTCTGTCTGAACTGTAGCGATTGGCTTTGCGATGCTTGCGTTTCTGCTCATCAGAGAGTGAGAGTAACAAAAGACCACAAGATACAATCCGAAGCGCAGTACTTGGAAAATTCGGAAACCGCGAATGCGAAGCCCATTTTTTGTGTTACACATCCAACGGAATCATTGAAGCTCTTCTGTGCAAATTGCGAGAAATTGACTTGCCGGGATTGCCAGCTTCTTGAACATAAGGATCATAAGTATCAGTTTATTAAAGAAGCGGCGACGAGTTACAAAGAGTATCTCCGAGGACAACTGAATCGTTTGTATGAACAAGCGCAACCCCTAACAGAATCCATTCGAGAAGTAGAGAAAGCGGCCAAGGGTTTACAAGATCGAGAAGAAAACATAGCAAGTGAGATTAAAAAGTCGTCAGAAATGCTTGTCAAGGCAgtcaaacaaagagaaaatgtaTTGTTAACAGAGTTGAAGGCTCTTGTACATTTTAAACACAAACTTTTGTCAAAGCAGAACAAAGATCTTAGATTGATGCAAAAGATTTTGCAACACAATTACGGATTTACCAGGCACGTTTTGAAGAACGGTAGTGACATGGGTTTGTTGTACAGCAAACGACAACTCAGCTCAAGAATTCAGAATTTATTGAGTCTGAAATACAATGTGCTTCCAGTTGCACACagtgatttgaaattttctgttgAAACAGAAAAACTGTGTTCTGTGATCTCTAAACTTGGTAGTGTCATGACCCCAGCAGACCGGACAATTACAAATTCAAGTCGACCTGATGCTTCTTTTCGTGGTTTATCCAATGCAAGTAGCTATACAGCGGCTCCCAGTACTGGCATCCCTTCTGGTAATCGTCCAGTAAACTTACGACCAAACCCTATTGAAGCACTATCTGCTGTTAACAAGCGCTTAGGTGCACCTAGTAGCCATTCCTATTCTGTGTCAAAATACCCTGGCTCTCTTCAAGCTGCAATTGTTCACCCTTCAGGTGCTAACGTGACAATAAATAGCAAAATTGGTGTTGTGCCAGCGAACAGTGTTTCTCGACCTGCACTGATGAGCTCAACACAATCAGGTGCACACAGCCTTGCTATTAAGCCAGGGGGTGGTAGTACAAGCAATGGCCTTTCTTTTGTGCCACGGAGTTCAACTGTGACTACATCATCAAATCTCACACGCTTGTCACCTCCTCGTCAAATGCGAAATGGAAGTACCCTACCGTTACGACATTTTCAAGACATAGGAACTAAAATCAGAAAATCTCCACCACCGCCGCAACTGCCACTGCGTCCCTTGAGCAGTGGTAGTAACAGCAGCCATCAGAGTGTGTCTCCACTCAGTGATTCGTCTACTTCTTTCTCTAAACAGAATGGCTGGGAAGAAAATTCTCCTTCTATGGACTTGCCGAGTCAAGTCTCACAAGGTGCAAGTTCACCCACCAGTGTAGCAGACCCTGTGGTACCTCCTGCTGTCCCAAAGCTTCCCCCTGTGCTAAAGAGAAGCCTAAGCTCACAGAATGCATCAGAAACTGTCGTATCTCCTCCAGTGCCCAAACTGCTGCCTGTGAAAAGGAGCAACAGTTCTCAGGGGATACCAGAGCCAGTCGTGTCCCCAGTTTCATCCTCACCGCCACCAGTCAAAGTCAAGCAGGAAAAGCCAGAATCGCCCATGGAATATTCGCCTTGTCAAGAATCTGTTAAGAAGCAACAGCAAGATGATGTCACTAGTGGAGAGAGTGGAATTGATGAGACTGGTTCAAATGACGACTGGTGTGCTGTGTGCCGTAATGGTGGGGAACTTCTGTGCTGCGACACATGCCCACGTGTGTTTCACTTGCAGTGCCATGTACCTTCCCTAACTAGTCTTCCTAGTGATAACTGGAGCTGTGGATTATGCCAAGATGTGGACTGGAATGCACTTAAACAGAAAGATCAGGAAATGTGTGTACCAGGAAACAAAAGACGATCCTCAGTCAATGGTTTGACAGAATATGAAAAGAAGgCCTGTGAGAAGATTATGCTGgagttgttttgtcatgctgaTAGTATCCCATTTCAGCAGAAAGTTAGCAAATCAGTTCCTAACTACTACAAAGTGATTTCCCGTCCCATGGATTTGTCTAATGTCCGTGCCAAGCTCCAGACGCAGAATTTTGCACACTATCAAAACTTCAACGAGTTTGTTGCAGATTGCCGACTTATCTTTGAAAACTGTGCAATTTTTAATGAAGCAACCTCTGAAGTTGGCAAAATGGGCAGCAACCTAGAGGTATACTTTAACAGTGTACTGAAAAAATATGTGCCAAATTATGTGGAGCCATCATCAGAACCAAAGGCTAAGAGGAAGAAAGATGAAGCAAGGATGTACATACTGAATCAGTGA

Transcript

g18734.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
O15164	Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005605 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g18734.t1.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.