Detailed information of g188.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_033626390.1, histamine N-methyltransferase-like isoform X2 [Asterias rubens]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9GJW7Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus OX=9913 GN=GABARAP PE=3 SV=2
O95166Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens OX=9606 GN=GABARAP PE=1 SV=1
Q9DCD6Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus OX=10090 GN=Gabarap PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyULD|UBL|ATG8

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15188CCDC-167Coiled-coil domain-containing protein 167Coiled-coilInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF12657TFIIIC_deltaTranscription factor IIIC subunit delta bet-propeller domainRepeatInterproscan
PF19745FUT8_N_catAlpha-(1,6)-fucosyltransferase N- and catalytic domainsDomainInterproscan
PF02991ATG8Autophagy protein Atg8 ubiquitin likeDomainInterproscan
PF15053Njmu-R1Njmu-R1-like protein familyFamilyInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF13489Methyltransf_23Methyltransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028194FamilyCoiled-coil domain-containing protein 167Interproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR024761DomainTranscription factor IIIC, 90kDa subunit, N-terminalInterproscan
IPR045573DomainAlpha-(1,6)-fucosyltransferase, N- and catalytic domainInterproscan
IPR027350DomainGlycosyltransferase family 23 (GT23) domainInterproscan
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR004241FamilyAutophagy protein Atg8 ubiquitin-likeInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR028280FamilyProtein Njmu-R1Interproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31759COILED-COIL DOMAIN-CONTAINING PROTEIN 167Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR13132ALPHA- 1,6 -FUCOSYLTRANSFERASEInterproscan
PTHR10969MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATEDInterproscan
PTHR14416PROTEIN NJMU-R1Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0036071Biological ProcessN-glycan fucosylationInterproscan
GO:0046921Molecular Functionalpha-(1->6)-fucosyltransferase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000045Biological Processautophagosome assemblyInterproscan
GO:0000421Cellular Componentautophagosome membraneInterproscan
GO:0000422Biological Processautophagy of mitochondrionInterproscan
GO:0005776Cellular ComponentautophagosomeInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006995Biological Processcellular response to nitrogen starvationInterproscan
GO:0016236Biological ProcessmacroautophagyInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0050811Molecular FunctionGABA receptor bindingInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0099041Biological Processvesicle tethering to GolgiInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12813DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16EC:5.6.2.6
Mitochondrial biogenesisko03029deepkoala
Spliceosomeko03041deepkoala

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