Gene detail

Detailed information of g1880.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_155155820.1, DNA-directed RNA polymerase subunit alpha [Curvivirga aplysinae]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q2W2L3	DNA-directed RNA polymerase subunit alpha OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=rpoA PE=3 SV=1
Q5FU07	DNA-directed RNA polymerase subunit alpha OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpoA PE=3 SV=1
Q2RQY4	DNA-directed RNA polymerase subunit alpha OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rpoA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00416	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan
PF01000	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan
PF03118	RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	Domain	Interproscan
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF00406	ADK	Adenylate kinase	Domain	Interproscan
PF01196	Ribosomal_L17	Ribosomal protein L17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001892	Family	Small ribosomal subunit protein uS13	Interproscan
IPR027437	Homologous_superfamily	Small ribosomal subunit protein uS13, C-terminal	Interproscan
IPR010979	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR006259	Family	Adenylate kinase subfamily	Interproscan
IPR011773	Family	DNA-directed RNA polymerase, alpha subunit	Interproscan
IPR000850	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR011262	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR033690	Conserved_site	Adenylate kinase, conserved site	Interproscan
IPR019980	Family	Small ribosomal subunit protein uS13, bacterial-type	Interproscan
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036373	Homologous_superfamily	Large ribosomal subunit protein bL17 superfamily	Interproscan
IPR011260	Domain	RNA polymerase, alpha subunit, C-terminal	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR000456	Family	Large ribosomal subunit protein bL17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004017	Molecular Function	adenylate kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016776	Molecular Function	phosphotransferase activity, phosphate group as acceptor	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0019205	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009123	Biological Process	nucleoside monophosphate metabolic process	Interproscan
GO:0009132	Biological Process	nucleoside diphosphate metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00939	adk, AK; adenylate kinase	EC:2.7.4.3	Exosome	ko04147	deepkoala