Gene detail

Detailed information of g1881.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: CAH3151756.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g1881.t1

ATGCCAATCCCAGGAGTTACAGTAGAGgatGTGGATGCATATTCAGATGTCTCCAATGGCTCAACAATTTCAGTGGGGAGTGCAGCATCTGGAGGGAGTGGCCACATGCCAAGACCACCGACAGCAAAGTCACCCTACTCAAGTTCTCAGCTGAAAGTTTCATCAAAGCAACAATTTCCCAAACCCACTGCTAGAAACATGTGGATCTCTGCAATGAAGAATGGCACTGCAACCCTGAGCACTGAAAACAGTCCTATGAGGACTGTTGCTGGCTCCAGAGCCTTGTACACCAAGAATtcaaagactggaactagacaACGGCATTTAAGTGATTTTGTTACGACAGACAACTTAAAGAACAAAAACCATGTGCGGAGTGCTAGCATGTCAGCAAGGGTTAATCCCTGCATATGTTTGACGTATCTTAAAGGTGAACCTCAGGTGGCTGGGGGTGGTCCTGCCTACAAACCACAGGAAGACTATTATGATGAGATTATAGAGTTGAAGAAGGTCATAAATGCTTTGAAAGCAGAAAACAATGTCATCAACACAAAACTTCGAAGGGTTGAAGGAGAGAATGTGTTGAAGGATAGAAAGATGGAAGACCTGTTGAATCAAAGAAAGCAGATTGTAAACAGTTTGAAACAGAAACTCCATGCTGTGGAACGAACAGTGAAAGATAAAGAAGCTGAACTGAGTCCAAGAAACAGTACCTCGCCAAGAGACCCAAAAAGGCCGTCAAGCTTGACTCTCAAGCGACTAGCAGagGAAAACGACCACCTGAAAGCAGAAAATCGTAGTCTCAAAAAAGATTTATTGGTAGCAATAGAAAACTCAACCGGCAGTAACAGGAAGGTTCCTTTGAAAGCTGAATATGCAGATATGAATCGGGGACAACTTCTGGCCAAGATTCATGAACTCGAGGAAAAACTTCAAGATtccgatgaaaagaagactCTGCTTCGCAAAGGATCCTTACGCGACGACAAGGAAGAAGATGGCGAAGTTAGAAGGACAAGTATCTCAAAATTAGCTGAAGTGCCAGGAAGAATCCAGTTGAAGGGATCGACATCTCATAAACTGGCTCAGCTGCAAGAAAGGGAAGGAGAGCTCCTAGAAGAAAGACAGAAACAGCGGGAAGTCATTGAGCGACTCAAGGAAGATCGTGCTCATTACAGATCAGTAGCCGATGCTCTCAGTCCAAGAAGGCTGTCCATCAAAGAGTCTCGTCCACtggatgataatgatgacgacatGGATCGGATGTTGAGAGAATTCCAACAGCAGCGAGCCGCCAAGACGCTTCAGAGACAGTGGCGAGGCTTCCAAGGAAAAAAGCAACGAGTGAGACAAGAAGAGGAAAACAGACAGAACCAAGCTGCTGCAACGCTGCAGAAAAACTGGCGGAAACACAGAGATAGGAACAGGCAAATGGAAGCCAAAGCAAAGGAAGCGGCAATAACGGAGATCCAAGCAGCCCTACGAGGTCAGGCGGCGCGCAGCCAGTTTATCGAACAACTGGACAAGGGATTGGAAGTGACAGACCGTGATGACGCAATTGTCGTCATCCAATCAGCCATGAGAGCGCACTTAGCGAGAAAGAAGCACCTAGGGGAACCTGGGGACGAGCTAGTGTCACGTGATTCGAGGACTCGAGGAAGTTCCAGTCACGCCCTGCTTGGCTCGGAGCAATATGCCGGTGATGGCCTGGTGACTAAATCAACCAGCAGTAGGAGGCACCCAGAGCCTGCCATAGCAGGTCCAAGAAGATCCAGTTTGTCAGACCAACAGGAATGGCCCGGTACTCTGCTACCCACGCCCAATCCAACGGCTACGACAGAGCGTAACCTGGCACCAGCACTTGATTCAGCATTTGTCGGTGGCAAACCACTTGCACCAGCACGTGATCAAGAATATGCACGTGATTTTAGGGAACCCGCACACGATGAAGCTCTTGCACCAGTACCACTAAAACGTGATAAGACCCGTGCTCCCAAGGCACTTCCACGTAGTAAGACACTAACACGTGGCCAACACCATACAAGTGCTGAAGCACGTGATACTGTAGCAAGCGATGAAGCGCTTGATGAAAAGCGTCGTGGTAAAGCACTTGCAAAAGATGAGGAAAATGCACTTGATCACGCACGTGATCGTTCTGCACCCGCACTTGACAAAGCACGCGATACTTCGGTAGTTGCACGTGATGATACACTTGTTGAAAATCATGTTTCACGTGGGGAGGCACTTGTGCACCATAAGGAACTCGCACGTGCTCAATCTTCTCTCGCTAGTGACCAATCAGAGTCTGACTCGGATGATGACACGGTAGTGATTGGTCGCTCATCCAAAGGTAGAACAGACAAACAATCGAATTTTCAAACTCAAATGAGCTCCAGTGAGCTCGTAGAAAGCGAGCGAAACACTTCGGCAGTTACGACAGATTCGCTTGTCAAGACGACGAAAATATCTCACGGGAAGAAAGAATCCGCTAAGAAGGAATCAGCAACGAGCAAAATCAAAGATGGTAACGATGAGAGAAGTAAAGTAGAGGGTTCGCGACGTTTGATCTCCGCCCCAAGGTTTTCAAATATCTCTGAACAGAGCGAAGATGAAGGCACGAGTCTCGAGAGTTCAAAGTCAAATCGAAATCGGTTTGATGAGCCATCAAAAGTGCGGTCAGCGCACAGAGAATTTGAGCAGCGGCCAAAGAAGAAAAGCTTCGAAATCGTGGACAGTGATGACGAcgaggacgatgatgatgatgatgtggtGGTGGTGCCACGATCAAGGAGAGCGCTTGATACAGGACACATCAACCAACAGCGGCCTTCTCTTTCCCCTTCAAGGCGAACAATAAGCCCTCCGGCTGTGAGCGAAGAAAAGACCAGGCCTGGATTATCACGCTCGACTTACGGGATTAGCTCTCTCGAGGAGAGAGTATTAACCACTGAAGGAAGGCCTGGTTTATCACGCGCTTCGGGAAAGTTGGCAGCCTTTCGGAATGTGGAAAACTCTGAACCCGTCAGTGATGAAAATTTGCAAAGACCGAGTCGGTTGAGTTCTAAAAGACCGTTGAGTGCGAAGAGATCGAATTCAGATCGTAACGATAGCCCTGGTGAAGGAGGGGAAAATCAAAGAACTACGGGCTGGGGACAATTTAATCCACCCGCAGAATCCGAGGGCGatagcgatgatgatgatgacgtgGTCGTCGTCGGAAGAAAGACGAAGGCCGCAAGTGGTGGTGAGAAAACAGGCCGTCCCAGGCTCACTCGGAAGTCGCATGGAAGTTCACTCCAAGCGCCGCCTCCGCGTGAAACACTGTCCAGCAGTCTGGACAATTTTTTCTCCTCGACCGCTCCATCCGCAGCACACTCTAGCAGCAAGAAGTCACCCCGGAAAACGCCTGCTCGTGTTGATGAAAATGAAGACGATgttgatgacgacgatgatgatgatgatgatgatgatgatgatgatgatgacgacgacatAGTAATTTCTTCGCGCTCAAAATATAAGTCCAGAAAGAAGGAGGCGTCCAGGAAAGACTCTCGCGACTCAGTCACAGATTTGTGGGCCACATCAGAAAAACGAAGCAACTCTAGCAAGGGAAAATCTGCCTTTGAGGACGAGGACTTGTCGGAATTGGACCCGACGCTGACGAATCTAGAAGAGGGAGATAGTTATGACCAGCTCAACGATGACACGTTTGGCTCAGGAGCCTTAGAGGATGACTGGGAGCTTTCCCACAGGAAAATAACAGGGATACATGAGGAGGGCACAAATGAAGCACAGTTTACTGACTGGCTGAGAGAGAAAGGATTTGCGCATCAGCAAGGTGAACGGAAATCAACATCctccagagaaaaaaaagttgtcaCTCAAGAAGATTTTGAAGATGAATTGGATAGAGAAGAGGAAATTCTTGAACAGAATTTGAATAAACTTGTGGATGATGATGAAGCTGACTCGATACCTATTCCCAGGATGTCATCCAAGTACAAGGGTGTCAAGCACCCACCTGGTGTGAACCCAACATGGGATGGAACTTCACCTTTGTCCAGCCcaacatcatcaacatcattgcATGATCTGATCTCACCATCTTCCAATATATGGGGATCTCCTTCCAAAGGGGataaagagaacaaaaacaaggGACCAGTCAATACCCCACAGTCACCACTGGATGAAATCCTCAAAGCAGAGATTGAGAGGAAACGCAAGCTAAGGAGACCTTTTTCGCCCGCGTTTGAGGATGATTCAATAGTCACAGCCATTCCTCCACCAGGCCTGTTGCCTCCAAGCCGGTTTGCAAAGAAACCTCCTCCTGTAAATGCCATCAAACTAGAGGACCTGGAGAAAGAACTCACTGGTGATACCAGTGCACCTCAGCAAGTACCTGAAGGACCAAAGCAAACACCTCGTAAGACAATGATTGGACAACCTCCTCCTGGTATTCCTCGGCCCATGATGACACCTCCTGGTTTTCCTTCTTCTGTGTCAAGAATGCATTCTCCTCAAGTGCCACACCAGATGTTGCGACAAGCAAGACCCAGTTCCTCTAAACGACCAGTTCCTAGTATGGCAGGAATACCTGGCATGCCAGGACCGCTAAACCCAGCTCCAGGGCCACATTTGTTGAGAACTCCTAGGGCACAGCTGTTTCCAAGACATCCATTTCCTGTGATGCATTCTGACCCTGGTCATTTCATGCTGCGAGGAGGAGGTTTGCTTAACTTCCCAGTGAACCCCCAGCATGCAAGGTTTGCCAGCCCTCAGCATCTTAACAACAGATTTCATGATCCTCGCCAGAACTTTCCAAGAAACCAGTATGACAAGCGATTCTTCCATGATAGTCGTCCACCAAGACTACAGGACAGAGGTGAACATCAGCATCAAATTAGTGACTTGGAGAGGAAGATTCACAACATCTTAACTCTTGCTGAGAACAGCCCAAGAAGAGATGACCCTTATGCAGGGCTTATGACAAGAAGAGAGAAGGAATGGTTGATCAAGATTCAATTACTCCAACTCACTAGCAGTGAGCCAGAACTGGACGATTATTATTTTCAGACTTACACAAGAAGGAAAGTAGCCAAGGAGCATGCAAAAGAGAGTGAGGGCGTGCAGTTAAGGCCCAGTGTACAAGACAATAGAACAAACAGGGAAACAACTAACATGGCCTTACCACAGTTTGAACGAGAGAAAAGGACATACACTCCGATGGACTTTCAAGGTTCTTTAGGAAAGGTTTCATCAGCGTCGGTTCAACACCCCAGGCAAATGGTGGATTTGCATGTAACGCACATTGCAAAAGGCACCGAACAGgAAAAGCAAGGGGGCTCAACTCCCATAAAGGACACTAAAAGGCGAAGCCAGCTCTTGCTTACAATAGAAAAGGGCTACGACTATCTTTTGAACATTGGAAGTTTAGACAAAAAGTTGATTCATGTTGAGGAGCAGGAGAGAAATGAACTCATTGAAACCAGGCATCTTAATGTTATGAAGCTGTTTTCATCTTTAAAGCTATCCACAGAGGATTCTGAAAAGTGTGATGATGAATTCTTTATTCAATTTTTGTCCGTCCAAAAAGGAAGGCATCTTCTCAGTAGGGCATTACCAGTGTTTAACaagGTTCAGGTGGAAGGAGTGGTGATGGCCATAACAAGGAATATTTTACCCCTTATTAAAAAGGACAGCAGTGGAGAGtcCTTACAACATTTGATGGTTCCTCTCAATCGCGTGTCAGAGCTGTTGTCTCCGTCAGCTGTGTTCCGCTGTCTTCAAAGCATGGTGTTTGCACATGGCATCTCCACCGCTCAAGGGTCTCCTCTCCCTGTGGTCCTAGTTAGCCAGTTTGGCTTAGGAATTTTTAGCATATTATTGGGAAGAGCAGCTGTCATATCCAACAGTTTGACTGAATGTGAGGATGAGATGAGAAAATCTTGGTTGAACATCGTCTCGCATGTCGCAACTGAGTTTCAAGATATTCCTGTTAAGCAGCTGGGAAGGAATCTTGAAGCAGCTGACAGATTAGTGGCCTTGTTGTCCACGTGTACAGATGTTCAAACCAGAGCTTTATTGCAGGAGCACCTGAGgttGGCCGCTTCTGCCAAATCAGAAGTTAAAGCGTAG

Transcript

g1881.t1

Protein

g1881.t1.1

MPIPGVTVEDVDAYSDVSNGSTISVGSAASGGSGHMPRPPTAKSPYSSSQLKVSSKQQFPKPTARNMWISAMKNGTATLSTENSPMRTVAGSRALYTKNSKTGTRQRHLSDFVTTDNLKNKNHVRSASMSARVNPCICLTYLKGEPQVAGGGPAYKPQEDYYDEIIELKKVINALKAENNVINTKLRRVEGENVLKDRKMEDLLNQRKQIVNSLKQKLHAVERTVKDKEAELSPRNSTSPRDPKRPSSLTLKRLAEENDHLKAENRSLKKDLLVAIENSTGSNRKVPLKAEYADMNRGQLLAKIHELEEKLQDSDEKKTLLRKGSLRDDKEEDGEVRRTSISKLAEVPGRIQLKGSTSHKLAQLQEREGELLEERQKQREVIERLKEDRAHYRSVADALSPRRLSIKESRPLDDNDDDMDRMLREFQQQRAAKTLQRQWRGFQGKKQRVRQEEENRQNQAAATLQKNWRKHRDRNRQMEAKAKEAAITEIQAALRGQAARSQFIEQLDKGLEVTDRDDAIVVIQSAMRAHLARKKHLGEPGDELVSRDSRTRGSSSHALLGSEQYAGDGLVTKSTSSRRHPEPAIAGPRRSSLSDQQEWPGTLLPTPNPTATTERNLAPALDSAFVGGKPLAPARDQEYARDFREPAHDEALAPVPLKRDKTRAPKALPRSKTLTRGQHHTSAEARDTVASDEALDEKRRGKALAKDEENALDHARDRSAPALDKARDTSVVARDDTLVENHVSRGEALVHHKELARAQSSLASDQSESDSDDDTVVIGRSSKGRTDKQSNFQTQMSSSELVESERNTSAVTTDSLVKTTKISHGKKESAKKESATSKIKDGNDERSKVEGSRRLISAPRFSNISEQSEDEGTSLESSKSNRNRFDEPSKVRSAHREFEQRPKKKSFEIVDSDDDEDDDDDDVVVVPRSRRALDTGHINQQRPSLSPSRRTISPPAVSEEKTRPGLSRSTYGISSLEERVLTTEGRPGLSRASGKLAAFRNVENSEPVSDENLQRPSRLSSKRPLSAKRSNSDRNDSPGEGGENQRTTGWGQFNPPAESEGDSDDDDDVVVVGRKTKAASGGEKTGRPRLTRKSHGSSLQAPPPRETLSSSLDNFFSSTAPSAAHSSSKKSPRKTPARVDENEDDVDDDDDDDDDDDDDDDDDDIVISSRSKYKSRKKEASRKDSRDSVTDLWATSEKRSNSSKGKSAFEDEDLSELDPTLTNLEEGDSYDQLNDDTFGSGALEDDWELSHRKITGIHEEGTNEAQFTDWLREKGFAHQQGERKSTSSREKKVVTQEDFEDELDREEEILEQNLNKLVDDDEADSIPIPRMSSKYKGVKHPPGVNPTWDGTSPLSSPTSSTSLHDLISPSSNIWGSPSKGDKENKNKGPVNTPQSPLDEILKAEIERKRKLRRPFSPAFEDDSIVTAIPPPGLLPPSRFAKKPPPVNAIKLEDLEKELTGDTSAPQQVPEGPKQTPRKTMIGQPPPGIPRPMMTPPGFPSSVSRMHSPQVPHQMLRQARPSSSKRPVPSMAGIPGMPGPLNPAPGPHLLRTPRAQLFPRHPFPVMHSDPGHFMLRGGGLLNFPVNPQHARFASPQHLNNRFHDPRQNFPRNQYDKRFFHDSRPPRLQDRGEHQHQISDLERKIHNILTLAENSPRRDDPYAGLMTRREKEWLIKIQLLQLTSSEPELDDYYFQTYTRRKVAKEHAKESEGVQLRPSVQDNRTNRETTNMALPQFEREKRTYTPMDFQGSLGKVSSASVQHPRQMVDLHVTHIAKGTEQEKQGGSTPIKDTKRRSQLLLTIEKGYDYLLNIGSLDKKLIHVEEQERNELIETRHLNVMKLFSSLKLSTEDSEKCDDEFFIQFLSVQKGRHLLSRALPVFNKVQVEGVVMAITRNILPLIKKDSSGESLQHLMVPLNRVSELLSPSAVFRCLQSMVFAHGISTAQGSPLPVVLVSQFGLGIFSILLGRAAVISNSLTECEDEMRKSWLNIVSHVATEFQDIPVKQLGRNLEAADRLVALLSTCTDVQTRALLQEHLRLAASAKSEVKA

Uniprot

Uniprot term	Description
B5DF93	Protein PAT1 homolog 1 OS=Rattus norvegicus OX=10116 GN=Patl1 PE=2 SV=1
Q5R8Q4	Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1
Q3TC46	Protein PAT1 homolog 1 OS=Mus musculus OX=10090 GN=Patl1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR039900	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000290	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan