Gene detail

Detailed information of g18863.t2 in Acropora digitifera

Genomic Location: chr9Alt:167316...174999
NR annotation: XP_015754906.1, PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 41-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g18863.t2

ATGGGAAAACTGAGGGACGGGACGAGTTTATCTGCAGCAAGAAGTCAAGCTGCTCGTAGAGAAGTCATTCGACCTTTTGTTTGCTCAACTTTTCAAGATTTTCACAGAGAAAGGGACTTCTTACAGGAGTGCATATTTCCTCAATTGAACACACTATGCAATACGCGAGGAATTTCGTTCCTACCGGTAGATTTACGCTGGAACAAGAGTCAGTCTCACCATAACAATGAACATGTTCTTCGTATGTGTTTGGATAGCATTGGAAGATGTGCACCATTCTTCATTTGTCTGTTGGGCAACAGATACGGTGTTCATCGAGCTGCCGAGAATGAGGTAAAAGATCCAGCTACTGAGGAATGGCTGAACAGGAACTTTGAAACTGCATCGGCGTGTGGATATGATTGGGTGCTTGAAGAAGAAAACAGGTTTAACAGTATCACAGAGTTAGAAATTGTGCAAGCATCTTTCCGTAGGAAGTATGACTTTGGCTACTTTTACTTCCGGAGCAACACAAAAATGGAAGCGAATCTTCAAGATCCTGTGGATGTATCTGTTAAAGAAAGTTTAGTGTCCCTGAACAAACCCGAAAGTCAATATGCCGCAAGGAAGCTAAGAGAGCTGAAACAGCAGATTATTGATACAGAGTTACCAGTTCGTCATTTTGCCTCTCTTGAAGAACTTGGAGAGCAGTTAATGAAAGACTGGGTTGCAGTTATAGAGGTTCATTATCCATCAATAAATCCACTGATATTTCCTACTACTGACTCAGAAGTGTGGCATGAATGGTCTGCCCAAGAGGCACTTGCTTCGAAGCATTGTAATTTATTTGTGAAGACTCCACGAATAAGGGAGATAATAGAAGTGTTGAACCTTCACGCTGAAGTGGAACAGGGAATCACAAGAAAGTCCAATATGGTGGCTCCAACAGCTGCAATCAGCACTTTCATGACCAGTCTTCCTGACAGTGACAAGGAAATCCTGCCACCGGTGTTGGTGCTAGCTGGTGAAAGTGGTTGTGGAAAATCCACTTGTGTAAGTCATTGGCTCAAGCAGTTCACATCCAGCCATCCTCAAGTGGCCATCATTCCCCATTTTGTTGGTTGTGACTCTGGTAGCAGTGACATCAGCAATTTCATGCGTCGTTGCACCAATGAATTACGTCATCACTACCTTGATTCTGATATTTGTGATGTAATTGATATCCATGATGTGAGTGACTTTGCAAGGGTAACAGAGGCATTCAGAGCAGCCATATCTCTAGGCCCATGTGTTATAGTTTTGGATGGGACAAATCACTTAGGCCATGCCTTGGATCGTCCAGCACACACAGTAAAAGAGACAAAGTGGTTACCTTCTTTTGTCCCAGTGTCATGTAGAATAATTGTCACAACTACAAAAGCTGATATCACTTATTTGGAGCTCTCAAAGAGGAAAGATGCGTACTGTATTGATGTACCACGATTTTTTGATGTGAAAGGAAAGAAAGACCTTTTAAGAGAATATGTGGGTTCTAACTACAAGTTTCTGGATGCCGCTGTTGTCTCTGAGATAACCTCCTCTAATCTTGCGCATTTACCGATGTACTACGTTGCGCTTGCTAGTGAGCTACGTATCTTGGGTGCTCACAAGAATTCTCAGAGATTATTAGACTCATATACCCATGCCCCAACATTGTTTGACTTGTGGAGTTTGATATTTCGCCGCTGGACTCATGAATATGGTTGGTTACGGGCTGCTGCCGCTCGCAGTCCAGTTCCCACCATGAAGGCTCAGGTATCACGTGATCGTATGAACAGTGGATGGATTGCTGATGTCTTAAGACTGATTGCCCTATCACGTGAGGGATTATCTGAAAATGAGGCTTTGAGTGCTCTTAAAGTCATGGGTTATGTGAACAAGTATGAAGTTACCAAAGCCCACTGGGAAATATTTCGACTTGCTGCGCAACACGCCCTGATGGAAATGCCTTCTGGGTTGTTGACCTTCTCTCACCAGTCAGCCCGAGCTGCGGTGGAAATTGCGTTGCTCGGTAATCTGACGTCTCCCTCTCAGGAAAGAGCCATTTCCCCCTTTCAAGAATCATGGGAACGACAGAAACAACAAGGACATGCAGTGCTAGCAAGTTTCTTTTCAAAAGAACCCTCGTGCAGGCGCACAGTCAGTGAGTTACCATGGCAACTAAGAATTGGCGGGAATTTTGAACAGTTAAGTTCCACTATTTGCAAGCCTAGTATGTTTTTAAGGTTGGCGGGCGTCAGGGGTGAAGAGCGTGGAAAGATCGATTTTATGTTGTATTGGAGAATCTTGAAACAAAAGGGTTACAAGCCTGAAGAGATCTTGTATCAGATGTGCATCAAAGTTGAAGAGACGTTGTTCAATAAGACAAATGAGTCAGCTACTGGAGAATTGGATGTCACTTCTCAAAAAATAGCGGAATTATCAGCCGTCGAGGATGTTTGTCAAAAAGACGACAATGAACAGTTAAATCAGCTTGAAGTTGCGCTTATTCACTTCTCCGCTGGGAAATTTCTCATTCAAGATGGAAATGATATCATGGCGCAAAATCTATTTCTGAGTGCATACAAGATGGCTTACCCCGTAGTTTCATTAAGTGATATTTACTTGCTGTTTGACATCCAGGAGTCACTGGGCAATCTTTATCTAAAACTCTCAGAAACAAACAGGGCGGTGTTTTGGTTCAATGGTGCTTTAAAGGCCGCTAAAGAAATAGCAAGCAAGGTTGATCAAACGGCGATGATGGGGCGAATTCTGGATCAACTGGCAATGTGTCGACTTCCAAATGAGGTGGTTCTCCCAATAGAAGTTGATGAGCAGTCACGTGCGTCCACGTGGACGGCGGGAAGAGTTAATACCAATATGACATCCGAAATTCAAGAATTTGAAGGAAACAACGAACGGCATGTCAGCAATACTTTGGATGAGGCTTTAAGACATTTGAAACTCGCCAATGATGTTCCGGGTCAGAGTAGCGTTTATTTTCACATGGGATTGTTGGCAGCAACGCAAAGGCGAACAGGCGATGCAGTGTGCTTATTTCACAAATCTCTGAAGATGAGAAAGGAATGGTACGGCTTGTCCCATCCTCTGGTAGCGGAGATCCATGATGCATTGGCGTCGATGATGTGTTCTGACGATACAACTGAGTCTGTAGATTTCGCGAAAGTGGAGGAAATGTTTCGGCAGGCCCTACGTATGCGAGAGGAATTGTTAGGCTCGTCCCATTTGATGGTTGCAAGCACTTTGTTTAAGCTAGGTAAACTTCTTCAAGCCAAGGGCACGAAAGATGCAGCAGCAGAGGCCAAAGTACTTTTTCAGAGAGCGCTAGACATACGAACCTCTCATCAAGGTGTGTACCACAGAGACTCCAAGTTGATTAGGCGAACTCTTATGTTGTTAGAAACATCAGAGGTGGCTGCGAGACTTGGCGAAAAAGCAACAAGAAAGGCGAGAGACCCATATGCTTTGAGCGGAAGGACAAGTCTCTTATCAACGCGGAAAACATCCCGCAAGAACCTTGCTATCAATCAAGCAACTGTGTCATAG

Transcript

chr9Alt.g18863.t2

ATCAACCAATGCAAAGTGGTGCATGTTTTTATCTTTCATATTTCAGCGAGGACCCCACAGGCCCTCCATTAGTTGCCAATGGGAAAACTGAGGGACGGGACGAGTTTATCTGCAGCAAGAAGTCAAGCTGCTCGTAGAGAAGTCATTCGACCTTTTGTTTGCTCAACTTTTCAAGATTTTCACAGAGAAAGGGACTTCTTACAGGAGTGCATATTTCCTCAATTGAACACACTATGCAATACGCGAGGAATTTCGTTCCTACCGGTAGATTTACGCTGGAACAAGAGTCAGTCTCACCATAACAATGAACATGTTCTTCGTATGTGTTTGGATAGCATTGGAAGATGTGCACCATTCTTCATTTGTCTGTTGGGCAACAGATACGGTGTTCATCGAGCTGCCGAGAATGAGGTAAAAGATCCAGCTACTGAGGAATGGCTGAACAGGAACTTTGAAACTGCATCGGCGTGTGGATATGATTGGGTGCTTGAAGAAGAAAACAGGTTTAACAGTATCACAGAGTTAGAAATTGTGCAAGCATCTTTCCGTAGGAAGTATGACTTTGGCTACTTTTACTTCCGGAGCAACACAAAAATGGAAGCGAATCTTCAAGATCCTGTGGATGTATCTGTTAAAGAAAGTTTAGTGTCCCTGAACAAACCCGAAAGTCAATATGCCGCAAGGAAGCTAAGAGAGCTGAAACAGCAGATTATTGATACAGAGTTACCAGTTCGTCATTTTGCCTCTCTTGAAGAACTTGGAGAGCAGTTAATGAAAGACTGGGTTGCAGTTATAGAGGTTCATTATCCATCAATAAATCCACTGATATTTCCTACTACTGACTCAGAAGTGTGGCATGAATGGTCTGCCCAAGAGGCACTTGCTTCGAAGCATTGTAATTTATTTGTGAAGACTCCACGAATAAGGGAGATAATAGAAGTGTTGAACCTTCACGCTGAAGTGGAACAGGGAATCACAAGAAAGTCCAATATGGTGGCTCCAACAGCTGCAATCAGCACTTTCATGACCAGTCTTCCTGACAGTGACAAGGAAATCCTGCCACCGGTGTTGGTGCTAGCTGGTGAAAGTGGTTGTGGAAAATCCACTTGTGTAAGTCATTGGCTCAAGCAGTTCACATCCAGCCATCCTCAAGTGGCCATCATTCCCCATTTTGTTGGTTGTGACTCTGGTAGCAGTGACATCAGCAATTTCATGCGTCGTTGCACCAATGAATTACGTCATCACTACCTTGATTCTGATATTTGTGATGTAATTGATATCCATGATGTGAGTGACTTTGCAAGGGTAACAGAGGCATTCAGAGCAGCCATATCTCTAGGCCCATGTGTTATAGTTTTGGATGGGACAAATCACTTAGGCCATGCCTTGGATCGTCCAGCACACACAGTAAAAGAGACAAAGTGGTTACCTTCTTTTGTCCCAGTGTCATGTAGAATAATTGTCACAACTACAAAAGCTGATATCACTTATTTGGAGCTCTCAAAGAGGAAAGATGCGTACTGTATTGATGTACCACGATTTTTTGATGTGAAAGGAAAGAAAGACCTTTTAAGAGAATATGTGGGTTCTAACTACAAGTTTCTGGATGCCGCTGTTGTCTCTGAGATAACCTCCTCTAATCTTGCGCATTTACCGATGTACTACGTTGCGCTTGCTAGTGAGCTACGTATCTTGGGTGCTCACAAGAATTCTCAGAGATTATTAGACTCATATACCCATGCCCCAACATTGTTTGACTTGTGGAGTTTGATATTTCGCCGCTGGACTCATGAATATGGTTGGTTACGGGCTGCTGCCGCTCGCAGTCCAGTTCCCACCATGAAGGCTCAGGTATCACGTGATCGTATGAACAGTGGATGGATTGCTGATGTCTTAAGACTGATTGCCCTATCACGTGAGGGATTATCTGAAAATGAGGCTTTGAGTGCTCTTAAAGTCATGGGTTATGTGAACAAGTATGAAGTTACCAAAGCCCACTGGGAAATATTTCGACTTGCTGCGCAACACGCCCTGATGGAAATGCCTTCTGGGTTGTTGACCTTCTCTCACCAGTCAGCCCGAGCTGCGGTGGAAATTGCGTTGCTCGGTAATCTGACGTCTCCCTCTCAGGAAAGAGCCATTTCCCCCTTTCAAGAATCATGGGAACGACAGAAACAACAAGGACATGCAGTGCTAGCAAGTTTCTTTTCAAAAGAACCCTCGTGCAGGCGCACAGTCAGTGAGTTACCATGGCAACTAAGAATTGGCGGGAATTTTGAACAGTTAAGTTCCACTATTTGCAAGCCTAGTATGTTTTTAAGGTTGGCGGGCGTCAGGGGTGAAGAGCGTGGAAAGATCGATTTTATGTTGTATTGGAGAATCTTGAAACAAAAGGGTTACAAGCCTGAAGAGATCTTGTATCAGATGTGCATCAAAGTTGAAGAGACGTTGTTCAATAAGACAAATGAGTCAGCTACTGGAGAATTGGATGTCACTTCTCAAAAAATAGCGGAATTATCAGCCGTCGAGGATGTTTGTCAAAAAGACGACAATGAACAGTTAAATCAGCTTGAAGTTGCGCTTATTCACTTCTCCGCTGGGAAATTTCTCATTCAAGATGGAAATGATATCATGGCGCAAAATCTATTTCTGAGTGCATACAAGATGGCTTACCCCGTAGTTTCATTAAGTGATATTTACTTGCTGTTTGACATCCAGGAGTCACTGGGCAATCTTTATCTAAAACTCTCAGAAACAAACAGGGCGGTGTTTTGGTTCAATGGTGCTTTAAAGGCCGCTAAAGAAATAGCAAGCAAGGTTGATCAAACGGCGATGATGGGGCGAATTCTGGATCAACTGGCAATGTGTCGACTTCCAAATGAGGTGGTTCTCCCAATAGAAGTTGATGAGCAGTCACGTGCGTCCACGTGGACGGCGGGAAGAGTTAATACCAATATGACATCCGAAATTCAAGAATTTGAAGGAAACAACGAACGGCATGTCAGCAATACTTTGGATGAGGCTTTAAGACATTTGAAACTCGCCAATGATGTTCCGGGTCAGAGTAGCGTTTATTTTCACATGGGATTGTTGGCAGCAACGCAAAGGCGAACAGGCGATGCAGTGTGCTTATTTCACAAATCTCTGAAGATGAGAAAGGAATGGTACGGCTTGTCCCATCCTCTGGTAGCGGAGATCCATGATGCATTGGCGTCGATGATGTGTTCTGACGATACAACTGAGTCTGTAGATTTCGCGAAAGTGGAGGAAATGTTTCGGCAGGCCCTACGTATGCGAGAGGAATTGTTAGGCTCGTCCCATTTGATGGTTGCAAGCACTTTGTTTAAGCTAGGTAAACTTCTTCAAGCCAAGGGCACGAAAGATGCAGCAGCAGAGGCCAAAGTACTTTTTCAGAGAGCGCTAGACATACGAACCTCTCATCAAGGTGTGTACCACAGAGACTCCAAGTTGATTAGGCGAACTCTTATGTTGTTAGAAACATCAGAGGTGGCTGCGAGACTTGGCGAAAAAGCAACAAGAAAGGCGAGAGACCCATATGCTTTGAGCGGAAGGACAAGTCTCTTATCAACGCGGAAAACATCCCGCAAGAACCTTGCTATCAATCAAGCAACTGTGTCATAGTATACTTCAGTTTGAAGAGATGATACGTCTTCAACACAATATCTTCTTTTTTGAGGTCATTGTACTTTTGAGCTTCCGAATCCACAGTGAGAGCTGATTCTAATCTTAAAATATGATAGGGTTATAGCTCATTTCAAACGGTTCCCAATGAATGATTTGTACGAGATGAGATTACTTCTACCTGCCATGATTACTTTTACAACTGCTCCTGACACTGTCCGAATTTCCTATGTAAACCGTATGCCAACAAACAAATACGGTATAAGAAACTGTTTTTTCACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q692V3	Tetratricopeptide repeat protein 41 OS=Mus musculus OX=10090 GN=Ttc41 PE=1 SV=1
Q6P2S7	Putative tetratricopeptide repeat protein 41 OS=Homo sapiens OX=9606 GN=TTC41P PE=5 SV=3
Q6P3V7	Tetratricopeptide repeat protein 41 OS=Rattus norvegicus OX=10116 GN=Ttc41 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24944	TTC41; tetratricopeptide repeat protein 41	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g18863.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.