Gene detail

Detailed information of g18963.t2 in Acropora digitifera

Genomic Location: chr9Alt:1054464...1062587
NR annotation: XP_015757441.1, PREDICTED: apoptosis-inducing factor 3-like isoform X1 [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr9Alt.g18963.t2

CGAGAAGGACTGGCGATAATAACGGATTGGTTGGGTTCGAGTATTGACATCTGTGGAATCTTTCAGTGGTTGAGAGTCTGTATAGTAAAGCTGAGGTAAGAACGTCCAGGAAGCTTTAACACGCCCTATGTCACTTAGAATTTCATAGACATAAAAAAAAAAAAGATGTTGCGCGAATTTGTTAAGCGAGGCATAGGTTCCGGTGAATGTGTTTGTTCAATATCACAGTTAACCCAATTAGCATACAGGCTTCGTTTCCTAACAACTTTGTCAAACCCCACTTACGTAATGGGGGTTACAATTTCCTCCAAGAAGAAAGACGTAGTCCAAAGGGTCCCTAAACCATCCGGCTCTAGTTTCGGCTCTAGTTTCACGACAACTAGTAGAATTGAAACCTCTGGTTTCGTACAGGAAGGAGCATCTGGAGAATCCTTGATGTCCAACATGATTGAAGTCACTGTAGGGCAGTATGATAGCTGCCTGCAAGATGGCACCATGAAAACAATTGATATTGGTGAAACAGGCAAAGCATTGTTAGTGCGTGAAAATGGCCAGTATTTTGCAGTGGGTCACAAGTGCACTCATTATGGAGCACCACTTGTTACTGGACACCTGAGTAATGGACGAGTTCGCTGTCCTTGGCATGGAGCTTGCTTTAATGTCAAAACTGGAGATATTGAAGATTTTCCTGGACTAGACAGCATTCCAAAATTTGAGGTGGTCATTAAAAATGATGATGTCATTGTAAGAGCACACCCAGAGCAATTGACTTCACACAAACGAGTAAAAAAGATGGTGAAAGCAGACACCAATGAAGACAGAAGGGTCTTTGTCATCATAGGTGGAGGTGGATCAGCTATGAAAGGAGCAGAAACTCTGAGAGAGGAAGGATTCACTGGTAGAGTTGTCATGGTAACCAAGGAATCACACTTTCCATATGATCGACCACTTCTCAGTAAGAAATTAACTGCCAGTGCTGATGCAATAAAGCTACGTCCAGAGGAATATTTTAAAGACCATGATATTGAATTTCTTCACGGACTTGAGGCTACAGCTCTAGATGCCAACAAAAAGACTGTTACCTTGAGCAATGGAACACAGTTGAAATATGACAATGTGCTTATCGCTACTGGTGGCAGACCAAGAAGTTTAAATGTGCCTGGAAGTGACCTACAGAACATATTCCTGTTAAGGAGCCCTGAGGATGCTAACAAAATTGCTGATTTTGCCCAAGGAAAAAAAGTTGTTATCATTGGAACATCATTTATTGGCATGGAACTGGCTGCAAACTTTTCTGACAAAGCAGCATCAGTAACTTGTGTTGGTAGAAGCAGCCCACCCTTTGCAAATGTGCTTGGAGAGAAAATAGGCAACATGCTGAAAAAGATTCATGAAAGTAAAGGAGTCAAATTCATCACTGATGCTGCTGTGAAAGAGTTCAAAGGAGAAAATGGAAAGCTCATGGCTGTATGTTTTGACAATGGCACAGAAGTTCTTGCAGATCTTTGTGTTCAGGGAGTAGGTGTTGTCCCATCAACTGACTTTTTGAAAAACAGTGGGGTTTCTCTGTCCAGTCGTGGGGATGTTATTGTTGACAAGTATATGAAGGCACGTGAGGGAGTGTTTGCTTCAGGGGATATAGCACACTTTCCTCTCAAGATGTTGAATGGTGAGAAGGTATCGATCGGTCACTGGCAGATAGCACACAAGCATGGTCAGACTGCTGCTCGTAACATGCTGGGACAAAAAGAAGAGATAAACACAATTCCTTTCTTTTGGACTTCGCAATTTGGCAAGAGTATCCGATACTGTGGTCATGCTCACTCTTTTGATGATGTGATTATTGATGGAGATGTGGATGAGCAGAAGTTTACAGCTTATTATGTCAAAGGTGACCGTATCATGGCTGTCGCTACCATGGGGCCTGGAAATGCAGCAGCAAAAGCAGCCAATGACATGTTTGAAGGAAAGATGCCTTCTGCGTCAGAAATAAGGGCTAGTCTTTAAAGACCATCTTATACAGGACAATATCAAACTGCCTTAGATGCTTTGTAAATTTTTACTGAAAGCTGATAAAAATCCTGCTGCTCAATTGAGGAAAGAGCCATTTCCTTAGCTATGCAGGCTAGTTGCGGTGAAAACTTCCCACACTAGGCATCAAACATTTTGATACGTTCCGGGTAGTTAACATGCCCTTTATAGCCACCCAAATTAAGAATCGGCTTTGACAAAGAAAAGCTCATTTATAACTTTTTGTCATTAGCAAAAAAGTATATACTATGCATTTCCATTGGGTATCAAAGACTATATAGTGTCAGTCAAATTAATAAATTAAAGCTCAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96NN9	Apoptosis-inducing factor 3 OS=Homo sapiens OX=9606 GN=AIFM3 PE=1 SV=1
Q3TY86	Apoptosis-inducing factor 3 OS=Mus musculus OX=10090 GN=Aifm3 PE=1 SV=1
Q10499	Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=aif1 PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF00355 all species →	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan
PF14759 all species →	Reductase_C	Reductase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR016156 all species →	Homologous_superfamily	FAD/NAD-linked reductase, dimerisation domain superfamily	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR017941 all species →	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan
IPR036922 all species →	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan
IPR028202 all species →	Domain	Reductase, C-terminal	Interproscan
IPR050446 all species →	Family	FAD-dependent Oxidoreductases and Apoptosis Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43557 all species →	APOPTOSIS-INDUCING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22747	AIFM3; apoptosis-inducing factor 3	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.