Gene detail

Detailed information of g19.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBL8642505.1, homoserine O-acetyltransferase [Rhodospirillaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q2RP84	Homoserine O-acetyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=metXA PE=3 SV=1
Q89UL7	Homoserine O-acetyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=metXA PE=3 SV=1
Q98G09	Homoserine O-acetyltransferase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=metXA PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF04666	Glyco_transf_54	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region	Family	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan
PF09011	HMG_box_2	HMG-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR006759	Family	Glycosyl transferase family 54	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR051681	Family	Serine/Threonine Kinases and Pseudokinases	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008220	Family	Homoserine/serine acetyltransferase MetX-like	Interproscan
IPR000073	Domain	Alpha/beta hydrolase fold-1	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR031061	Family	High mobility group protein HMGB, plant	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24007	BRCA1-ASSOCIATED PROTEIN	Interproscan
PTHR12062	N-ACETYLGLUCOSAMINYLTRANSFERASE VI	Interproscan
PTHR44329	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR32268	HOMOSERINE O-ACETYLTRANSFERASE	Interproscan
PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0006487	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0004414	Molecular Function	homoserine O-acetyltransferase activity	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0009092	Biological Process	homoserine metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16743	ASPM, ASP; abnormal spindle-like microcephaly-associated protein	-	Cysteine and methionine metabolism	ko00270	deepkoala
			Transporters	ko02000	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala